netassoc

Package: netassoc
Type: Package
Title: Inference of Species Associations from Co-Occurrence Data
Version: 0.6.2
Date: 2015-11-23
Author: Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Description: Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.
License: GPL-3
Depends: igraph, infotheo
Imports: rags2ridges, corpcor, huge, vegan
NeedsCompilation: no
Packaged: 2015-11-23 21:40:00 UTC; benjaminblonder
Repository: CRAN
Date/Publication: 2015-11-24 07:46:52

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'netassoc' ...
** package 'netassoc' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'netassoc'
    finding HTML links ... done
    make_netassoc_network                   html  
    netassoc-package                        html  
    pairwise_association                    html  
    partial_correlation                     html  
    plot_netassoc_matrix                    html  
    plot_netassoc_network                   html  
    finding level-2 HTML links ... done

** building package indices
** testing if installed package can be loaded
* DONE (netassoc)
Making 'packages.html' ... done