neuroim

Package: neuroim
Imports: Matrix, yaImpute, Rcpp, iterators, abind, assertthat, readr,
rgl
LinkingTo: Rcpp
License: GPL (>= 2)
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Type: Package
Author: Bradley R. Buchsbaum
Title: Data Structures and Handling for Neuroimaging Data
Description: A collection of data structures that represent
volumetric brain imaging data. The focus is on basic data handling for 3D
and 4D neuroimaging data. In addition, there are function to read and write
NIFTI files and limited support for reading AFNI files.
Date: 2016-01-06
Suggests: foreach, testthat, knitr
Version: 0.0.6
Depends: R (>= 3.0.0), stringr, hash, methods, stats, grDevices, grid,
utils
VignetteBuilder: knitr
Collate: 'AFNI_IO.R' 'AllGeneric.R' 'AllClass.R' 'Axis.R' 'BinaryIO.R'
'BrainData.R' 'common.R' 'NIFTI_IO.R' 'BrainFileDescriptor.R'
'BrainMetaInfo.R' 'BrainRegion3D.R' 'BrainSlice.R'
'BrainSpace.R' 'BrainSurface.R' 'SparseBrainVector.R'
'BrainVector.R' 'BrainVolume.R' 'Display.R' 'FREESURFER_IO.R'
'IndexLookupVolume.R' 'Ops.R' 'RcppExports.R' 'conncomp.R'
'datadoc.R' 'neuroim.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-01-07 20:45:46 UTC; brad
Repository: CRAN
Date/Publication: 2016-01-07 23:59:04

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'neuroim' ...
** package 'neuroim' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c indexFuns.cpp -o indexFuns.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o neuroim.so RcppExports.o indexFuns.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/neuroim/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'close' from package 'base' in package 'neuroim'
Creating a generic function for 'as.matrix' from package 'base' in package 'neuroim'
Creating a generic function for 'as.array' from package 'base' in package 'neuroim'
Creating a generic function for 'as.list' from package 'base' in package 'neuroim'
Creating a generic function for 'image' from package 'graphics' in package 'neuroim'
** help
*** installing help indices
  converting help for package 'neuroim'
    finding HTML links ... done
    AFNIFileDescriptor-class                html  
    AFNIMetaInfo-class                      html  
    AxisSet-class                           html  
    AxisSet1D-class                         html  
    AxisSet2D-class                         html  
    AxisSet3D-class                         html  
    AxisSet4D-class                         html  
    AxisSet5D-class                         html  
    Base-class                              html  
    BaseMetaInfo-class                      html  
    BaseSource-class                        html  
    BinaryReader-class                      html  
    BinaryReader                            html  
    BinaryWriter-class                      html  
    BootstrapSearchlight                    html  
    BrainBucket-class                       html  
    BrainBucketSource-class                 html  
    BrainData-class                         html  
    BrainFileDescriptor-class               html  
    BrainFileSource-class                   html  
    BrainMetaInfo-class                     html  
    BrainSlice-class                        html  
    BrainSlice                              html  
    BrainSource-class                       html  
    BrainSpace-class                        html  
    BrainSpace                              html  
    BrainSurface-class                      html  
    BrainSurfaceSource-class                html  
    BrainSurfaceVector-class                html  
    BrainSurfaceVectorSource-class          html  
    BrainVector-class                       html  
    BrainVectorSource-class                 html  
    BrainVectorSource                       html  
    BrainVolume-class                       html  
    BrainVolume                             html  
    BrainVolumeSource-class                 html  
    ClusteredBrainVolume-class              html  
    ColumnReader-class                      html  
    ColumnReader                            html  
    DenseBrainVector-class                  html  
    DenseBrainVolume-class                  html  
    FileMetaInfo-class                      html  
    FreeSurferSurfaceGeometryMetaInfo-class
                                            html  
    FreesurferAsciiSurfaceFileDescriptor-class
                                            html  
    IndexLookupVolume-class                 html  
    Kernel-class                            html  
    Kernel                                  html  
    Layer-class                             html  
    Layer                                   html  
    LogicalBrainVolume-class                html  
    MNI_SPACE_1MM                           html  
    NIMLSurfaceDataMetaInfo-class           html  
    NIMLSurfaceDataMetaInfo                 html  
    NIMLSurfaceFileDescriptor-class         html  
    NIfTIFileDescriptor-class               html  
    NIfTIMetaInfo-class                     html  
    NamedAxis-class                         html  
    NullMetaInfo-class                      html  
    ROIVolume-class                         html  
    ROIVolume                               html  
    RandomSearchlight                       html  
    RegionCube                              html  
    RegionSphere                            html  
    RegionSquare                            html  
    Searchlight                             html  
    SparseBrainVector-class                 html  
    SparseBrainVectorSource-class           html  
    SparseBrainVolume-class                 html  
    SurfaceDataMetaInfo-class               html  
    SurfaceDataMetaInfo                     html  
    SurfaceGeometryMetaInfo-class           html  
    SurfaceGeometryMetaInfo                 html  
    addDim-methods                          html  
    as-methods                              html  
    as.array-BrainData-method               html  
    as.list-methods                         html  
    as.logical-methods                      html  
    as.mask-methods                         html  
    as.matrix-BrainData-method              html  
    as.matrix-methods                       html  
    as.numeric-methods                      html  
    as.raster-methods                       html  
    as.sparse-methods                       html  
    as.vector-BrainData-method              html  
    axes-methods                            html  
    axisToIndex-methods                     html  
    bounds-methods                          html  
    close-methods                           html  
    clusterCenters-methods                  html  
    concat-methods                          html  
    connComp-methods                        html  
    connComp3D                              html  
    coordToGrid-methods                     html  
    coordToIndex-methods                    html  
    coords-methods                          html  
    dataFile-methods                        html  
    dataFileMatches-methods                 html  
    dataReader-methods                      html  
    dim-BrainData-method                    html  
    dim-BrainSpace-method                   html  
    dim-FileMetaInfo-method                 html  
    dropDim-methods                         html  
    eachSeries-methods                      html  
    eachSlice-methods                       html  
    eachVolume-methods                      html  
    fileMatches-methods                     html  
    fill-methods                            html  
    gridToCoord-methods                     html  
    gridToIndex-methods                     html  
    headerFile-methods                      html  
    headerFileMatches-methods               html  
    image-methods                           html  
    imageGrid                               html  
    indexToCoord-methods                    html  
    indexToGrid-methods                     html  
    indices-methods                         html  
    internal-methods                        html  
    inverseTrans-methods                    html  
    length-methods                          html  
    loadBucket                              html  
    loadData-methods                        html  
    loadFSSurface                           html  
    loadSurface                             html  
    loadVector                              html  
    loadVolume                              html  
    loadVolumeList                          html  
    lookup-methods                          html  
    makeVector                              html  
    makeVolume                              html  
    map-methods                             html  
    mapToColors                             html  
    matchAnatomy2D                          html  
    matchAnatomy3D                          html  
    matrixToVolumeList                      html  
    mergePartitions-methods                 html  
    names-methods                           html  
    ndim-methods                            html  
    neuroim                                 html  
    numClusters-methods                     html  
    origin-methods                          html  
    overlay-methods                         html  
    partition-methods                       html  
    permMat-methods                         html  
    pick-methods                            html  
    print-AxisSet2D-method                  html  
    print-AxisSet3D-method                  html  
    print-NamedAxis-method                  html  
    print-methods                           html  
    readAFNIHeader                          html  
    readColumns-methods                     html  
    readElements-methods                    html  
    readHeader                              html  
    readMetaInfo-methods                    html  
    render-methods                          html  
    renderSlice-methods                     html  
    scaleSeries-methods                     html  
    series-methods                          html  
    seriesIter                              html  
    show-AxisSet1D-method                   html  
    show-AxisSet2D-method                   html  
    show-AxisSet3D-method                   html  
    show-AxisSet4D-method                   html  
    show-BaseMetaInfo-method                html  
    show-BrainSpace-method                  html  
    show-BrainVector-method                 html  
    show-BrainVectorSource-method           html  
    show-BrainVolume-method                 html  
    show-FileMetaInfo-method                html  
    show-NamedAxis-method                   html  
    show-NullMetaInfo-method                html  
    show-ROIVolume-method                   html  
    show-SparseBrainVector-method           html  
    show-SurfaceDataMetaInfo-method         html  
    show-SurfaceGeometryMetaInfo-method     html  
    slice-methods                           html  
    sliceData                               html  
    space-methods                           html  
    spacing-methods                         html  
    splitFill-methods                       html  
    splitReduce-methods                     html  
    splitScale-methods                      html  
    stripExtension-methods                  html  
    sub-BrainBucket-index-missing-ANY-method
                                            html  
    sub-ROIVolume-numeric-missing-ANY-method
                                            html  
    sub-SparseBrainVector-missing-missing-ANY-method
                                            html  
    sub-SparseBrainVector-missing-numeric-ANY-method
                                            html  
    sub-SparseBrainVector-numeric-missing-ANY-method
                                            html  
    sub-SparseBrainVector-numeric-numeric-ANY-method
                                            html  
    sub-SparseBrainVolume-matrix-missing-ANY-method
                                            html  
    sub-SparseBrainVolume-missing-missing-ANY-method
                                            html  
    sub-SparseBrainVolume-missing-numeric-ANY-method
                                            html  
    sub-SparseBrainVolume-numeric-missing-missing-method
                                            html  
    sub-SparseBrainVolume-numeric-numeric-ANY-method
                                            html  
    sub-sub-BrainBucket-index-missing-method
                                            html  
    subVector-methods                       html  
    takeSeries-methods                      html  
    takeVolume-methods                      html  
    tesselate-methods                       html  
    trans-methods                           html  
    values-methods                          html  
    voxels-methods                          html  
    writeElements-methods                   html  
    writeVector-methods                     html  
    writeVolume-methods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (neuroim)
Making 'packages.html' ... done