nonlinearTseries

Package: nonlinearTseries
Type: Package
Title: Nonlinear Time Series Analysis
Version: 0.2.3
Date: 2015-07-17
Maintainer: Constantino A. Garcia <constantinoantonio.garcia@usc.es>
Authors@R: c(person("Constantino A.", "Garcia",
email = "constantinoantonio.garcia@usc.es",
role = c("aut", "cre")),
person("Gunther", "Sawitzki",
role = "ctb"))
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
License: GPL (>= 3)
Copyright: ANN library is copyright University of Maryland and Sunil
Arya and David Mount. R wrapper is based on the ANN library,
copyright Samuel Kemp 2005-9 and Gregory Jefferis 2009-2013.
See file COPYRIGHT for details
Depends: Matrix, rgl, tseries, TSA, Rcpp (>= 0.10.5), graphics, stats
LinkingTo: Rcpp
Suggests: plot3D, knitr,
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-07-25 11:31:31 UTC; gaussllego
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Repository: CRAN
Date/Publication: 2015-07-25 17:43:38

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nonlinearTseries' ...
** package 'nonlinearTseries' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c ANN.cpp -o ANN.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c Lyapunov.c -o Lyapunov.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c LyapunovFromTakens.c -o LyapunovFromTakens.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c NN.cc -o NN.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bd_pr_search.cpp -o bd_pr_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bd_search.cpp -o bd_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bd_tree.cpp -o bd_tree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c brute.cpp -o brute.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c corrDim.c -o corrDim.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c genericFunctions.c -o genericFunctions.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c informationDimension.c -o informationDimension.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_dump.cpp -o kd_dump.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_pr_search.cpp -o kd_pr_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_search.cpp -o kd_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_split.cpp -o kd_split.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_tree.cpp -o kd_tree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c kd_util.cpp -o kd_util.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c mutualInformation.cpp -o mutualInformation.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c neighbourSearch.c -o neighbourSearch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c nonlinearNoiseReduction.c -o nonlinearNoiseReduction.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c poincareMap.c -o poincareMap.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c rqa.c -o rqa.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c spaceTimePlot.c -o spaceTimePlot.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -IANN -DRANN -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c utils.cpp -o utils.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o nonlinearTseries.so ANN.o Lyapunov.o LyapunovFromTakens.o NN.o RcppExports.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o corrDim.o genericFunctions.o informationDimension.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o mutualInformation.o neighbourSearch.o nonlinearNoiseReduction.o poincareMap.o rqa.o spaceTimePlot.o utils.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/nonlinearTseries/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nonlinearTseries'
    finding HTML links ... done
    FFTsurrogate                            html  
    buildTakens                             html  
    cliffordMap                             html  
    contourLines                            html  
    corrDim                                 html  
    corrMatrix                              html  
    dfa                                     html  
    divTime                                 html  
    divergence                              html  
    embeddingDims                           html  
    estimate                                html  
    estimateEmbeddingDim                    html  
    findAllNeighbours                       html  
    fixedMass                               html  
    fluctuationFunction                     html  
    gaussMap                                html  
    henon                                   html  
    ikedaMap                                html  
    infDim                                  html  
    logRadius                               html  
    logisticMap                             html  
    lorenz                                  html  
    maxLyapunov                             html  
    mutualInformation                       html  
    neighbourSearch                         html  
    nlOrder                                 html  
    nonLinearNoiseReduction                 html  
    nonLinearPrediction                     html  
    nonlinearityTest                        html  
    plotLocalScalingExp                     html  
    poincareMap                             html  
    radius                                  html  
    recurrencePlot                          html  
    rossler                                 html  
    rqa                                     html  
    sampleEntropy                           html  
    sampleEntropyFunction                   html  
    sinaiMap                                html  
    spaceTimePlot                           html  
    surrogateTest                           html  
    timeAsymmetry                           html  
    timeAsymmetry2                          html  
    timeLag                                 html  
    windowSizes                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nonlinearTseries)
Making 'packages.html' ... done