nontarget

Package: nontarget
Type: Package
Title: Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Version: 1.8
Date: 2016-03-14
Author: Martin Loos
Maintainer: Martin Loos <Martin.Loos@eawag.ch>
Description: Screening a HRMS data set for peaks related by (1) isotope patterns, (2) different adducts of the same molecule and/or (3) homologue series. The resulting isotopic pattern and adduct groups can then be combined to so-called components, with homologue series information attached. Also allows plotting and filtering HRMS data for mass defects, frequent m/z distances and components vs. non-components.
License: GPL-3
Depends: enviPat (>= 1.9), nontargetData (>= 1.1), mgcv (>= 1.7-22)
NeedsCompilation: yes
Packaged: 2016-03-14 12:31:10 UTC; uchemadmin
Repository: CRAN
Date/Publication: 2016-03-14 15:23:51

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nontarget' ...
** package 'nontarget' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c homologues.cpp -o homologues.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c massCpp.cpp -o massCpp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c quantization.cpp -o quantization.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c searchTree.cpp -o searchTree.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o nontarget.so homologues.o massCpp.o quantization.o searchTree.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/nontarget/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nontarget'
    finding HTML links ... done
    adduct.search                           html  
    combine                                 html  
    deter.iso                               html  
    homol.search                            html  
    make.isos                               html  
    ms.filter                               html  
    nontarget-package                       html  
    pattern.search                          html  
    pattern.search2                         html  
    peaklist                                html  
    plotadduct                              html  
    plotall                                 html  
    plotcomp                                html  
    plotdefect                              html  
    plotdiff                                html  
    plotgroup                               html  
    plothomol                               html  
    plotisotopes                            html  
    rm.sat                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (nontarget)
Making 'packages.html' ... done