optpart

Package: optpart
Version: 2.2-0
Date: 2016-01-23
Title: Optimal Partitioning of Similarity Relations
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: cluster, labdsv, MASS, plotrix
Suggests: tree
Description: Contains a set of algorithms for creating
partitions and coverings of objects largely based on operations
on (dis)similarity relations (or matrices). There are several
iterative re-assignment algorithms optimizing different
goodness-of-clustering criteria. In addition, there are
covering algorithms 'clique' which derives maximal cliques, and
'maxpact' which creates a covering of maximally compact sets.
Graphical analyses and conversion routines are also included.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
Packaged: 2016-01-23 20:31:32 UTC; dvrbts
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-01-23 23:57:17

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'optpart' ...
** package 'optpart' successfully unpacked and MD5 sums checked
** libs
f95   -fpic  -g -O2  -c archi.f -o archi.o
f95   -fpic  -g -O2  -c clcdev.f -o clcdev.o
f95   -fpic  -g -O2  -c clcdul.f -o clcdul.o
f95   -fpic  -g -O2  -c clique.f -o clique.o
f95   -fpic  -g -O2  -c maxpact.f -o maxpact.o
f95   -fpic  -g -O2  -c optindval.f -o optindval.o
f95   -fpic  -g -O2  -c optpart.f -o optpart.o
f95   -fpic  -g -O2  -c optsil.f -o optsil.o
f95   -fpic  -g -O2  -c opttdev.f -o opttdev.o
f95   -fpic  -g -O2  -c permute.f -o permute.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c random.c -o random.o
f95   -fpic  -g -O2  -c tabdev.f -o tabdev.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o optpart.so archi.o clcdev.o clcdul.o clique.o maxpact.o optindval.o optpart.o optsil.o opttdev.o permute.o random.o tabdev.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/optpart/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'optpart'
    finding HTML links ... done
    archi                                   html  
    bestfit                                 html  
    bestopt                                 html  
    classmatch                              html  
Rd warning: /tmp/Rtmpdi6Bln/R.INSTALL30952b2319d/optpart/man/classmatch.Rd:48: missing file link 'partition'
    clique                                  html  
    clique.test                             html  
Rd warning: /tmp/Rtmpdi6Bln/R.INSTALL30952b2319d/optpart/man/clique.test.Rd:29: missing file link 'mps.test'
    clustering                              html  
    compare                                 html  
    confus                                  html  
    consider                                html  
    disdiam                                 html  
    extract                                 html  
    fuzconfus                               html  
    maxpact                                 html  
    mergeclust                              html  
Rd warning: /tmp/Rtmpdi6Bln/R.INSTALL30952b2319d/optpart/man/mergeclust.Rd:28: missing file link 'partition'
    murdoch                                 html  
    neighbor                                html  
    optindval                               html  
    optpart                                 html  
    finding level-2 HTML links ... done

    optpart.internal                        html  
    optsil                                  html  
    opttdev                                 html  
    partana                                 html  
    partition                               html  
    phi                                     html  
    refine                                  html  
    reordclust                              html  
    shoshsite                               html  
    shoshveg                                html  
    silhouette                              html  
    slice                                   html  
    stride                                  html  
    tabdev                                  html  
    testpart                                html  
    typal                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (optpart)
Making 'packages.html' ... done