parathyroidSE

Package: parathyroidSE
Title: RangedSummarizedExperiment for RNA-Seq of primary cultures of
parathyroid tumors by Haglund et al., J Clin Endocrinol Metab
2012.
Version: 1.10.0
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: This package provides RangedSummarizedExperiment objects of read counts in genes and exonic parts for paired-end RNA-Seq data from experiments on primary cultures of parathyroid tumors. The data were presented in the article "Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189. The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control). One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of the object from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211. The gene and exon features are the GRCh37 Ensembl annotations.
biocViews: ExperimentData, SequencingData, RNASeqData
License: LGPL
Depends: SummarizedExperiment, R (>= 2.10)
Suggests: Rsamtools, GenomicAlignments, GEOquery, SRAdb,
GenomicFeatures, BiocStyle
Packaged: 2016-05-07 20:31:08 UTC; biocbuild
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'parathyroidSE' ...
** data
** inst
** help
*** installing help indices
  converting help for package 'parathyroidSE'
    finding HTML links ... done
    exonsByGene                             html  
    parathyroidGenesSE                      html  
    finding level-2 HTML links ... done

** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (parathyroidSE)
Making 'packages.html' ... done