pathClass

Package: pathClass
Type: Package
Title: Classification using biological pathways as prior knowledge
Version: 0.9.4
Date: 2013-06-25
Author: Marc Johannes
Maintainer: Marc Johannes <JohannesMarc@gmail.com>
Description: pathClass is a collection of classification methods that
use information about feature connectivity in a biological
network as an additional source of information. This additional
knowledge is incorporated into the classification a priori.
Several authors have shown that this approach significantly
increases the classification performance.
Depends: R (>= 2.14), svmpath, kernlab, affy, Biobase, ROCR, igraph,
lpSolve
Enhances: parallel
Suggests: hu6800.db, golubEsets
License: GPL (>= 2)
LazyLoad: yes
Collate: 'CrossValidation.R' 'GeneRank.R' 'GraphSVM.R'
'networkBasedSVM.R' 'PathwayMethods.R'
'RecursiveFeatureElimination.R' 'RRFE.R' 'SpanBound.R' 'SVMs.R'
Packaged: 2013-06-29 11:48:33 UTC; mj
Repository: CRAN
Date/Publication: 2013-07-01 07:43:40
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pathClass' ...
** package 'pathClass' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'pathClass'
    finding HTML links ... done
    adjacency.matrix                        html  
    as.adjacencyList                        html  
    calc.diffusionKernel                    html  
    crossval                                html  
    desummarize.ranks                       html  
    extractFeatures                         html  
    fit.graph.svm                           html  
    fit.networkBasedSVM                     html  
    fit.rfe                                 html  
    fit.rrfe                                html  
    getGeneRanks                            html  
    mapping                                 html  
    matchMatrices                           html  
    pathClass-package                       html  
    plot.pathClassResult                    html  
    finding level-2 HTML links ... done

    predict.graphSVM                        html  
    predict.networkBasedSVM                 html  
    predict.rfe                             html  
    predict.rrfe                            html  
    read.hprd                               html  
    summarizeProbes                         html  
    x                                       html  
    y                                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pathClass)
Making 'packages.html' ... done