Last data update: 2014.03.03

pathVar

Package: pathVar
Type: Package
Title: Methods to Find Pathways with Significantly Different
Variability
Version: 1.2.0
Date: 2016-02-09
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <sezimmer@einstein.yu.edu>
Description: This package contains the functions to find the pathways
that have significantly different variability than a reference
gene set. It also finds the categories from this pathway that
are significant where each category is a cluster of genes. The
genes are separated into clusters by their level of
variability.
License: LGPL (>= 2.0)
Collate: classdef.R pipeline.final.R
LazyData: true
Depends: R (>= 3.2.2), methods, ggplot2, gridExtra
Imports: EMT, mclust, Matching, data.table
biocViews: GeneticVariability, GeneSetEnrichment, Pathways
NeedsCompilation: no
Packaged: 2016-05-04 06:35:53 UTC; biocbuild

● BiocViews: GeneSetEnrichment, GeneticVariability, Pathways
2 images, 17 functions, 3 datasets
● Reverse Depends: 0

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pathVar' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'pathVar'
    finding HTML links ... done
    bock                                    html  
    diagnosticsVarPlots                     html  
    geneDistributionSet-class               html  
    geneDistributionSet2-class              html  
    geneDistributionSet3-class              html  
    geneSet-class                           html  
    getGenes                                html  
    makeDBList                              html  
    pathVar-package                         html  
    pathVarOneSample                        html  
    pathVarTwoSamplesCont                   html  
    pathVarTwoSamplesDisc                   html  
    plotPway                                html  
    pways.kegg                              html  
    pways.reactome                          html  
    saveAsPDF                               html  
    sigPway                                 html  
    significantPathway-class                html  
    significantPathway2-class               html  
    significantPathway3-class               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pathVar)
Making 'packages.html' ... done