penalized

Package: penalized
Version: 0.9-47
Date: 2016-05-26
Title: L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation
in GLMs and in the Cox Model
Author: Jelle Goeman, Rosa Meijer, Nimisha Chaturvedi
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Depends: R (>= 2.10.0), survival, methods
Imports:
Suggests: globaltest
Description: Fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso and fused lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and Poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
License: GPL (>= 2)
Collate: onattach.R penfit.R breslow.R penalized.R core.R checkinput.R
cvl.R contrasts.R Brent.R plotpath.R cox.R logit.R linear.R
poisson.R
LazyLoad: yes
Repository: CRAN
Date/Publication: 2016-05-27 18:08:55
Packaged: 2016-05-27 11:43:08 UTC; jjgoeman
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'penalized' ...
** package 'penalized' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'coefficients' from package 'stats' in package 'penalized'
Creating a generic function for 'coef' from package 'stats' in package 'penalized'
Creating a generic function for 'residuals' from package 'stats' in package 'penalized'
Creating a generic function for 'fitted.values' from package 'stats' in package 'penalized'
Creating a generic function for 'fitted' from package 'stats' in package 'penalized'
Creating a generic function for 'weights' from package 'stats' in package 'penalized'
Creating a generic function for 'predict' from package 'stats' in package 'penalized'
Creating a generic function for 'plot' from package 'graphics' in package 'penalized'
Creating a generic function for 'as.matrix' from package 'base' in package 'penalized'
Creating a generic function for 'time' from package 'stats' in package 'penalized'
Creating a generic function for 'as.list' from package 'base' in package 'penalized'
** help
*** installing help indices
  converting help for package 'penalized'
    finding HTML links ... done
    breslow                                 html  
    contrasts                               html  
    cvl                                     html  
    nki70                                   html  
    penalized                               html  
    penfit                                  html  
    plotpath                                html  
    predict                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (penalized)
Making 'packages.html' ... done