phylotools

Package: phylotools
Type: Package
Title: Phylogenetic tools for Eco-phylogenetics
Version: 0.1.2
Date: 2011-8-18
Author: Jinlong Zhang, Nancai Pei, Xiangcheng Mi
Maintainer: Jinlong Zhang <jinlongzhang01@gmail.com>
Description: Building supermatrix for DNA barcodes using different
genes, calculating the inequality among lineages and
phylogenetic similarity for very large dataset using slicing
methods by invoking Phylocom.
Depends: seqRFLP, ape, picante, spaa, fields
Suggests: vegan
License: GPL-2
LazyLoad: yes
Packaged: 2012-10-29 08:59:27 UTC; ripley
Repository: CRAN
Date/Publication: 2012-10-29 08:59:27

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'phylotools' ...
** package 'phylotools' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'phylotools'
    finding HTML links ... done
    RMPD                                    html  
    add.mat                                 html  
    aln2dat                                 html  
    appendchar                              html  
    complement                              html  
    finding level-2 HTML links ... done

    dat2phy                                 html  
    del.tree.tip                            html  
    dimension                               html  
    edgesub                                 html  
    fasta.split                             html  
    fmatch                                  html  
    formatXY                                html  
    framsub                                 html  
    gini                                    html  
    hcreorder                               html  
    imagevect                               html  
    inequality                              html  
    meangini                                html  
    phy2dat                                 html  
    phylocom.comdist                        html  
    phylocom.comstruct                      html  
    phylocom.pd                             html  
    phylocom.phylosor                       html  
    phyloshuffle                            html  
    phylotools-package                      html  
    plotcut                                 html  
    plotscale                               html  
    read.phy                                html  
    rename.fasta                            html  
    resid.tree                              html  
    reverse                                 html  
    rh                                      html  
    rm.col                                  html  
    seq2fasta                               html  
    sub.tip.label                           html  
    supermat                                html  
    uniquefasta                             html  
    write.mat                               html  
** building package indices
** testing if installed package can be loaded
* DONE (phylotools)
Making 'packages.html' ... done