plmDE

Package: plmDE
Type: Package
Title: Additive partially linear models for differential gene
expression analysis
Version: 1.0
Date: 2012-05-01
Author: Jonas Mueller
Maintainer: Jonas <jonasmueller303@hotmail.com>
Depends: R (>= 2.14.2), MASS, splines, limma, R.oo
Suggests: Biobase, edgeR, DESeq
Description: A set of tools for identifying genes whose differential
expression is associated with measurements of other covariates
on a continuous scale. These methods rely on generalized
additive partially linear models which can be fitted
efficiently using a B-spline basis approximation. Still under
development: methods for interfacing with objects extending the
eSet class and a function to pass linear models in edgeR and
DEseq format.
License: GPL (>= 2)
Packaged: 2012-05-09 00:37:12 UTC; jonasmueller
Repository: CRAN
Date/Publication: 2012-05-09 04:06:58

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'plmDE' ...
** package 'plmDE' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'plmDE'
    finding HTML links ... done
    fitBspline                              html  
    fitGAPLM                                html  
    head.DEresults                          html  
    head.plmDE                              html  
    histDEresults                           html  
    info                                    html  
    info.plmDE                              html  
    limmaPLM                                html  
    finding level-2 HTML links ... done

    mostDE                                  html  
    plmDE-package                           html  
    plmDEmodel                              html  
    plmDEmodel.default                      html  
    plot.DEresults                          html  
** building package indices
** testing if installed package can be loaded
* DONE (plmDE)
Making 'packages.html' ... done