plsgenomics

Package: plsgenomics
Version: 1.3-1
Date: 2015-05-05
Title: PLS Analyses for Genomics
Author: Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>,
Ghislain Durif <ghislain.durif@univ-lyon1.fr>,
Sophie Lambert-Lacroix <Sophie.Lambert@imag.fr>, Julie Peyre
<Julie.Peyre@imag.fr>, and Korbinian Strimmer
<strimmer@uni-leipzig.de>.
Maintainer: Ghislain Durif <ghislain.durif@univ-lyon1.fr>
Depends: R (>= 3.0), MASS, boot, parallel
Suggests:
Encoding: latin1
Description: Routines for PLS-based genomic analyses,
implementing PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS. The >=1.3 versions includes a
new classification method combining variable selection and
compression in logistic regression context: RIRLS-SPLS; and
an adaptive version of the sparse PLS.
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/plsgenomics/index.html
Packaged: 2015-05-11 14:32:36 UTC; durif
Repository: CRAN
Date/Publication: 2015-05-11 17:05:40
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'plsgenomics' ...
** package 'plsgenomics' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'plsgenomics'
    finding HTML links ... done
    Colon                                   html  
    Ecoli                                   html  
    SRBCT                                   html  
    TFA.estimate                            html  
    gsim                                    html  
    gsim.cv                                 html  
    leukemia                                html  
    mgsim                                   html  
    mgsim.cv                                html  
    mrpls                                   html  
    mrpls.cv                                html  
    pls.lda                                 html  
    pls.lda.cv                              html  
    pls.regression                          html  
    pls.regression.cv                       html  
    plsgenomics-internal                    html  
    preprocess                              html  
    rirls.spls                              html  
    rirls.spls.tune                         html  
    rpls                                    html  
    rpls.cv                                 html  
    sample.bin                              html  
    sample.cont                             html  
    spls.adapt                              html  
    spls.adapt.tune                         html  
    variable.selection                      html  
** building package indices
** testing if installed package can be loaded
* DONE (plsgenomics)
Making 'packages.html' ... done