prada

Package: prada
Version: 1.48.0
Title: Data analysis for cell-based functional assays
Author: Florian Hahne <florian.hahne@novartis.com>, Wolfgang Huber <huber@ebi.ac.uk>, Markus Ruschhaupt, Joern Toedling <toedling@ebi.ac.uk>, Joseph Barry <joseph.barry@embl.de>
Maintainer: Florian Hahne <florian.hahne@novartis.com>
Depends: R (>= 2.10), Biobase, RColorBrewer, grid, methods, rrcov
Suggests: cellHTS, tcltk
Imports: Biobase, BiocGenerics, graphics, grDevices, grid, MASS,
methods, RColorBrewer, rrcov, stats4, utils
Collate: AllGenerics.R AllClasses.R methods-cytoFrame.R
methods-cytoSet.R methods-gate.R methods-gateSet.R
methods-misc.R analysePlate.R as.all.R barploterrbar.R
combineFrames.R csApply.R combineGates.R cytoFunctions.R
fitNorm2.R gateMatrix.R getPradaPar.R plotNorm2.R plotPlate.R
readCytoSet.R readFCS.R readSDM.R removeCensored.R thresholds.R
touchFCS.R tcltkProgress.R getAlphanumeric.R
Description: Tools for analysing and navigating data from high-throughput phenotyping experiments
based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening
microscopy).
License: LGPL
biocViews: CellBasedAssays, Visualization
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2016-05-04 02:41:38 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'prada' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c inPolygon.c -o inPolygon.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o prada.so inPolygon.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/prada/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'split' from package 'base' in package 'prada'
** help
*** installing help indices
  converting help for package 'prada'
    finding HTML links ... done
    analysePlate                            html  
    as.all                                  html  
    barploterrbar                           html  
    combineFrames                           html  
    csApply                                 html  
    cytoFrame-class                         html  
    cytoSet-class                           html  
    finding level-2 HTML links ... done

Rd warning: /tmp/RtmpumlcYO/R.INSTALL5d1e642bcd69/prada/man/cytoSet-class.Rd:88: missing file link 'phenoData-class'
    data-cytoFrame                          html  
    data-cytoSet                            html  
    devDims                                 html  
    devRes                                  html  
    fitNorm2                                html  
    gate-class                              html  
    gateSet-class                           html  
    getAlphaNumeric                         html  
    getPradaPar                             html  
    new-internal                            html  
    plotNorm2                               html  
    plotPlate                               html  
    readCytoSet                             html  
Rd warning: /tmp/RtmpumlcYO/R.INSTALL5d1e642bcd69/prada/man/readCytoSet.Rd:11: missing file link 'dir'
    readFCS                                 html  
    readFCSaux                              html  
    removeCensored                          html  
    tcltkProgress                           html  
    threePanelPlot                          html  
    thresholds                              html  
    touchFCS                                html  
    vpLocation                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (prada)
Making 'packages.html' ... done