prebs

Package: prebs
Title: Probe region expression estimation for RNA-seq data for improved
microarray comparability
Description: The prebs package aims at making RNA-sequencing (RNA-seq)
data more comparable to microarray data. The comparability is
achieved by summarizing sequencing-based expressions of probe
regions using a modified version of RMA algorithm. The pipeline
takes mapped reads in BAM format as an input and produces
either gene expressions or original microarray probe set
expressions as an output.
Version: 1.12.0
Author: Karolis Uziela and Antti Honkela
Maintainer: Karolis Uziela <karolis.uziela@scilifelab.se>
Depends: R (>= 2.14.0), GenomicAlignments, affy, RPA
Imports: parallel, methods, stats, GenomicRanges (>= 1.13.3), IRanges,
Biobase, GenomeInfoDb, S4Vectors
Suggests: prebsdata, hgu133plus2cdf, hgu133plus2probe
License: Artistic-2.0
Collate: 'PREBS.R'
biocViews: Microarray, RNASeq, Sequencing, GeneExpression,
Preprocessing
NeedsCompilation: no
Packaged: 2016-05-04 04:59:04 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'prebs' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'prebs'
    finding HTML links ... done
    calc_prebs                              html  
    prebs                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (prebs)
Making 'packages.html' ... done