ptw

Package: ptw
Type: Package
Title: Parametric Time Warping
Version: 1.9-11
Author: Jan Gerretzen <j.gerretzen@science.ru.nl>, Paul Eilers
<p.eilers@erasmusmc.nl>, Hans Wouters, Tom Bloemberg
<t.bloemberg@science.ru.nl>, Ron Wehrens <ron.wehrens@gmail.com>
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Description: Parametric Time Warping aligns patterns, i.e. it aims to
put corresponding features at the same locations. The algorithm
searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples
to the same reference, or several samples to several
references. One can choose between calculating individual
warpings, or one global warping for a set of samples and one
reference. Two optimization criteria are implemented: RMS (Root
Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported.
License: GPL (>= 2)
Imports: nloptr, graphics, grDevices, stats
NeedsCompilation: yes
Packaged: 2015-08-21 08:59:37 UTC; ron
Repository: CRAN
Date/Publication: 2015-08-21 11:48:26

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ptw' ...
** package 'ptw' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c approx.c -o approx.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smth.c -o smth.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c wcc.c -o wcc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c wccStick.c -o wccStick.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ptw.so approx.o smth.o wcc.o wccStick.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ptw/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ptw'
    finding HTML links ... done
    RMS                                     html  
    asysm                                   html  
    baseline.corr                           html  
    bestref                                 html  
    calc.multicoef                          html  
    calc.zerocoef                           html  
    coda                                    html  
    difsm                                   html  
    gaschrom                                html  
    lcms                                    html  
    mzchannel2pktab                         html  
    padzeros                                html  
    plot.ptw                                html  
    predict.ptw                             html  
    ptw                                     html  
    ptwgrid                                 html  
    select.traces                           html  
    warp.time                               html  
    wcc                                     html  
    whit1                                   html  
    whit2                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ptw)
Making 'packages.html' ... done