quipu

Package: quipu
Type: Package
Title: Summary charts of micro satellite profiles for a set of
biological samples
Version: 1.9.0
Date: 2014-04-15
Copyright: International Potato Center
Author: Reinhard Simon, Pablo Carhuapoma, Vilma Hualla, Stef de Haan, Marc
Ghislain, Jorge Nunez, Rene Gomez, Felipe de Mendiburu, William Roca,
Merideth Bonierbale
Maintainer: Reinhard Simon <R.SIMON@CGIAR.ORG>
Description: Gene banks increasingly use molecular markers for routine
characterization of plant collections and farmer managed diversity. The
gene bank of the International Potato Center presently uses a
micro-satellite marker kit to produce molecular profiles for potato
accessions. We have been searching for a compact graphical representation
that shows both molecular diversity and accession characteristics - thus
permitting biologists and collection curators to have a simple way to
interpret molecular data. Inspired by the ancient Andean data recording
system we devised a graph that allows for standardized representation while
leaving room for updates of the marker kit and the collection of
accessions. The graph has been used in several catalogs of potatoes.
License: GPL-2
VignetteBuilder: knitr
Suggests: knitr
Depends: R (>= 3.0.0), stats, agricolae, stringr, pixmap, shiny, xtable
Packaged: 2014-04-22 15:03:04 UTC; rsimon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 18:49:03

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'quipu' ...
** package 'quipu' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'quipu'
    finding HTML links ... done
    allele.freqs                            html  
    potato.quipu                            html  
    quipu-package                           html  
    rquipu                                  html  
    runDemo                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (quipu)
Making 'packages.html' ... done