rPlant

Package: rPlant
Version: 2.16
Date: 2016-04-01
Title: Interface to the Agave API
Author: Barb Banbury <darwinthesun@gmail.com> and Kurt Michels <kamichels@math.arizona.edu>, Jeremy M. Beaulieu <jeremy.beaulieu@yale.edu>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Kurt Michels <kamichels@math.arizona.edu>
Depends: R (>= 2.13.0), rjson, RCurl, seqinr
LazyData: yes
Repository/R-Forge/Project: rPlant
BugReports: https://r-forge.r-project.org/tracker/?group_id=1328
Description: Provides an interface to the the many computational resources iPlant offers through their RESTful application programming interface, see <http://www.iplantcollaborative.org/> for more information about iPlant, and <http://www.iplantcollaborative.org/ci/iplant-science-apis> for its APIs. Currently, 'rPlant' functions interact with the iPlant Agave API, the Taxonomic Name Resolution Service API, and the Phylotastic Taxosaurus API. Before using 'rPlant', users will have to register with the iPlant Collaborative. See <http://agaveapi.co/> for more information on the Agave API and <http://user.iplantcollaborative.org/> to register with iPlant.
URL: http://www.iplantcollaborative.org/discover/discovery-environment
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-04-01 22:15:11 UTC; michels
Repository: CRAN
Date/Publication: 2016-04-03 16:38:09

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rPlant' ...
** package 'rPlant' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'rPlant'
    finding HTML links ... done
    ClustalW                                html  
    FaST_LMM                                html  
    Fasttree                                html  
    GetAppList                              html  
    ListDir                                 html  
    Mafft                                   html  
    Muscle                                  html  
    PLINK                                   html  
    PLINKConversion                         html  
    RAxML                                   html  
    SubmitJob                               html  
    TNRS                                    html  
    UploadFile                              html  
    Validate                                html  
    rPlant-data                             html  
    rPlant-internal                         html  
    rplant-package                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rPlant)
Making 'packages.html' ... done