recluster

Package: recluster
Type: Package
Title: Ordination Methods for the Analysis of Beta-Diversity Indices
Version: 2.8
Date: 2015-02-22
Depends: vegan, ape
Imports: picante, phangorn, phytools, cluster
Author: Leonardo Dapporto, Matteo Ramazzotti, Simone Fattorini, Roger
Vila, Gerard Talavera, Roger H.L. Dennis
Maintainer: Leonardo Dapporto <leondap@gmail.com>
Description: Beta-diversity indices provide dissimilarity matrices with particular distribution of data requiring specific treatment. For example the high frequency of ties and zero values in turnover indices produces hierarchical cluster dendrograms whose topology and bootstrap supports are affected by the order of rows in the original matrix. Moreover, biogeographical regionalization can be facilitated by a combination of hierarchical clustering and multi-dimensional scaling. The recluster package provides robust techniques to analyze pattern of similarity in species composition.
License: GPL (>= 2.0)
LazyLoad: yes
URL: http://www.unifi.it/scibio/bioinfo/recluster.html
Packaged: 2015-03-06 16:50:42 UTC; matteo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-03-06 21:11:09

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'recluster' ...
** package 'recluster' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'recluster'
    finding HTML links ... done
    dataisl                                 html  
    datamod                                 html  
    multiboot                               html  
    recluster                               html  
    recluster.boot                          html  
    recluster.check                         html  
    recluster.col                           html  
    recluster.cons                          html  
    recluster.dist                          html  
    recluster.expl                          html  
    recluster.expl.diss                     html  
    recluster.group.col                     html  
    recluster.hist                          html  
    recluster.identify.nodes                html  
    recluster.line                          html  
    recluster.multi                         html  
    recluster.node.strength                 html  
    recluster.phybetadiv                    html  
    recluster.plot                          html  
    recluster.plot.col                      html  
    recluster.plot.matrix                   html  
    recluster.plot.sites.col                html  
    recluster.procrustes                    html  
    recluster.region                        html  
    recluster.rotate                        html  
    recluster.test.dist                     html  
    treebut                                 html  
    treemod                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (recluster)
Making 'packages.html' ... done