rfPred

Package: rfPred
Type: Package
Title: Assign rfPred functional prediction scores to a missense
variants list
Version: 1.10.0
Date: 2013-07-17
Author: Fabienne Jabot-Hanin, Hugo Varet and Jean-Philippe Jais
Depends: Rsamtools, GenomicRanges, IRanges, data.table, methods,
parallel
Suggests: BiocStyle
Maintainer: Hugo Varet <varethugo@gmail.com>
Description: Based on external numerous data files where rfPred scores
are pre-calculated on all genomic positions of the human exome,
the package gives rfPred scores to missense variants identified
by the chromosome, the position (hg19 version), the referent
and alternative nucleotids and the uniprot identifier of the
protein. Note that for using the package, the user has to be
connected on the Internet or to download the TabixFile and
index (approximately 3.3 Go).
License: GPL (>=2 )
URL: http://www.sbim.fr/rfPred
biocViews: Software, Annotation, Classification
NeedsCompilation: yes
Packaged: 2016-05-04 05:02:18 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rfPred' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c outstring.c -o outstring.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o rfPred.so outstring.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/rfPred/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'rfPred'
    finding HTML links ... done
    example_GRanges                         html  
    rfPred-package                          html  
    rfPred_scores-methods                   html  
    rfPred_scores_motor                     html  
    variant_list_Y                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rfPred)
Making 'packages.html' ... done