rsgcc

Package: rsgcc
Type: Package
Title: Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Version: 1.0.6
Author: Chuang Ma, Xiangfeng Wang
Maintainer: Chuang Ma <chuangma2006@gmail.com>
URL: http://www.cmbb.arizona.edu/
Depends: R (>= 2.15.1), biwt, cairoDevice, fBasics, grDevices, gplots,
gWidgets, gWidgetsRGtk2, minerva, parmigene, stringr, snowfall
Suggests: bigmemory, ctc
Description: This package provides functions for calculating
associations between two genes with five correlation
methods(e.g., the Gini correlation coefficient [GCC], the
Pearson's product moment correlation coefficient [PCC], the
Kendall tau rank correlation coefficient [KCC], the Spearman's
rank correlation coefficient [SCC] and the Tukey's biweight
correlation coefficient [BiWt], and three non-correlation
methods (e.g., mutual information [MI] and the maximal
information-based nonparametric exploration [MINE], and the
euclidean distance [ED]). It can also been implemented to
perform the correlation and clustering analysis of
transcriptomic data profiled by microarray and RNA-Seq
technologies. Additionally, this package can be further applied
to construct gene co-expression networks (GCNs).
LazyLoad: yes
License: GPL (>= 2)
Date: 2013-06-12
Packaged: 2013-06-18 01:18:38 UTC; wanglab
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-06-18 07:40:43

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rsgcc' ...
** package 'rsgcc' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c bridge.c -o bridge.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c grid.c -o grid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c mi.c -o mi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c points.c -o points.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o rsgcc.so bridge.o grid.o mi.o points.o -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/rsgcc/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'rsgcc'
    finding HTML links ... done
    adjacencymatrix                         html  
    cor.matrix                              html  
    cor.pair                                html  
    data                                    html  
    gcc.corfinal                            html  
    gcc.dist                                html  
    gcc.hclust                              html  
    gcc.heatmap                             html  
    gcc.tsheatmap                           html  
    getsgene                                html  
    onegcc                                  html  
    rsgcc-package                           html  
    rsgcc.gui                               html  
    uniqueTissues                           html  
** building package indices
** testing if installed package can be loaded
* DONE (rsgcc)
Making 'packages.html' ... done