safe

Package: safe
Title: Significance Analysis of Function and Expression
Version: 3.12.0
Author: William T. Barry
Description: SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.
Depends: R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM
Suggests: GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP,
survival, foreach, doRNG, Rgraphviz, GOstats
Maintainer: William T. Barry <bbarry@jimmy.harvard.edu>
License: GPL (>= 2)
biocViews: DifferentialExpression, Pathways, GeneSetEnrichment,
StatisticalMethod, Software
NeedsCompilation: no
Packaged: 2016-05-04 02:50:39 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'safe' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'safe'
    finding HTML links ... done
    SAFE-class                              html  
    gene.results                            html  
    getCmatrix                              html  
    p53.stat                                html  
    safe-internal                           html  
    safe-package                            html  
    safe                                    html  
    safe.toptable                           html  
    safedag                                 html  
    safeplot                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (safe)
Making 'packages.html' ... done