sangerseqR

Package: sangerseqR
Type: Package
Title: Tools for Sanger Sequencing Data in R
Version: 1.8.2
Date: 2014-07-17
Author: Jonathon T. Hill, Bradley Demarest
Maintainer: Jonathon Hill <jhill@byu.edu>
VignetteBuilder: knitr
Imports: methods, shiny
Depends: R (>= 3.0.2), Biostrings
Suggests: BiocStyle, knitr, RUnit, BiocGenerics
Description: This package contains several tools for analyzing Sanger
Sequencing data files in R, including reading .scf and .ab1
files, making basecalls and plotting chromatograms.
License: GPL-2
biocViews: Sequencing, SNP, Visualization
NeedsCompilation: no
Packaged: 2016-05-16 04:19:08 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'sangerseqR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'sangerseqR'
    finding HTML links ... done
    PolyPeakParser                          html  
    abif-class                              html  
    chromatogram                            html  
    makeBaseCalls                           html  
    read.abif                               html  
    read.scf                                html  
    readsangerseq                           html  
    sangerseq-class                         html  
Rd warning: /tmp/RtmpQ9xzhM/R.INSTALL311a4b07b7b7/sangerseqR/man/sangerseq-class.Rd:36: missing file link 'DNAString'
Rd warning: /tmp/RtmpQ9xzhM/R.INSTALL311a4b07b7b7/sangerseqR/man/sangerseq-class.Rd:39: missing file link 'DNAString'
    sangerseqAccessors                      html  
    finding level-2 HTML links ... done

    sangerseqR-package                      html  
    scf-class                               html  
Rd warning: /tmp/RtmpQ9xzhM/R.INSTALL311a4b07b7b7/sangerseqR/man/scf-class.Rd:28: missing file link 'DNAString'
    setAllelePhase                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sangerseqR)
Making 'packages.html' ... done