seqCNA

Package: seqCNA
Type: Package
Title: Copy number analysis of high-throughput sequencing cancer data
Version: 1.18.0
Date: 2015-01-09
Author: David Mosen-Ansorena
Maintainer: David Mosen-Ansorena <dmosen.gn@cicbiogune.es>
Import: GLAD, doSNOW, adehabitatLT, seqCNA.annot
Depends: R (>= 3.0), GLAD (>= 2.14), doSNOW (>= 1.0.5), adehabitatLT
(>= 0.3.4), seqCNA.annot (>= 0.99), methods
Description: Copy number analysis of high-throughput sequencing cancer
data with fast summarization, extensive filtering and improved
normalization
License: GPL-3
SystemRequirements: samtools
biocViews: CopyNumberVariation, Genetics, Sequencing
NeedsCompilation: yes
Packaged: 2016-05-04 05:01:01 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'seqCNA' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c seqCNA.cpp -o seqCNA.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o seqCNA.so seqCNA.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/seqCNA/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCNA'
    finding HTML links ... done
    SeqCNAInfo-class                        html  
    applyFilters                            html  
    applyThresholds                         html  
    plotCNProfile                           html  
    readSeqsumm                             html  
    runGLAD                                 html  
    runSeqnorm                              html  
    runSeqsumm                              html  
    seqCNA-package                          html  
    seqsumm_HCC1143                         html  
    writeCNProfile                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seqCNA)
Making 'packages.html' ... done