seqTools

Package: seqTools
Type: Package
Title: Analysis of nucleotide, sequence and quality content on fastq
files.
Version: 1.6.0
Date: 2013-10-14
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Description: Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.
biocViews: QualityControl,Sequencing
License: Artistic-2.0
Depends: methods, utils, zlibbioc
LinkingTo: zlibbioc
Suggests: RUnit, BiocGenerics
NeedsCompilation: yes
Packaged: 2016-05-04 05:55:53 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'seqTools' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/zlibbioc/include"   -fpic  -g -O2  -c seqTools.c -o seqTools.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o seqTools.so seqTools.o -lm -lz -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/seqTools/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'seqTools'
    finding HTML links ... done
    Fastqq-class                            html  
    ascii2char                              html  
    cbDistMatrix                            html  
    collectDur                              html  
    countDnaKmers                           html  
    countFastaKmers                         html  
    countGenomeKmers                        html  
    countSpliceKmers                        html  
    fastqKmerLocs                           html  
    fastqKmerSubsetLocs                     html  
    fastqq                                  html  
    gcContentMatrix                         html  
    kMerIndex                               html  
    meltDownK                               html  
    mergeFastqq                             html  
    mergedPhred                             html  
    phredDist                               html  
    phredTable                              html  
    plotGCcontent                           html  
    plotKmerCount                           html  
    plotNucCount                            html  
    plotNucFreq                             html  
    plotPhredQuant                          html  
    propPhred                               html  
    revCountDnaKmers                        html  
    seqTools-package                        html  
    simFastqqRunTimes                       html  
    sim_fq                                  html  
    trimFastq                               html  
    writeFai                                html  
    writeSimContFastq                       html  
    writeSimFastq                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seqTools)
Making 'packages.html' ... done