seriation

Package: seriation
Type: Package
Title: Infrastructure for Ordering Objects Using Seriation
Version: 1.2-0
Date: 2016-02-22
Authors@R: c(
person("Michael", "Hahsler", role = c("aut", "cre", "cph"),
email = "mhahsler@lyle.smu.edu"),
person("Christian", "Buchta", role = c("aut", "cph")),
person("Kurt", "Hornik", role = c("aut", "cph")),
person("Fionn", "Murtagh", role = c("ctb", "cph")),
person("Michael", "Brusco", role = c("ctb", "cph")),
person("Stephanie", "Stahl", role = c("ctb", "cph")),
person("Hans-Friedrich", "Koehn", role = c("ctb", "cph")))
Description: Infrastructure for seriation with an implementation of several
seriation/sequencing techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT).
Classification/ACM: G.1.6, G.2.1, G.4
URL: http://lyle.smu.edu/IDA/seriation
BugReports: https://github.com/mhahsler/seriation/issues
Depends: R (>= 2.14.0)
Imports: TSP, qap, grid, cluster, gclus, dendextend, colorspace, MASS,
gplots, registry, methods, stats, grDevices
Suggests: biclust, testthat, DendSer, GA
License: GPL-3
Copyright: The code in src/bea.f is Copyright (C) 1991 F. Murtagh;
src/bbwrcg.f, src/arsa.f and src/bburcg.f are Copyright (C)
2005 M. Brusco, H.F. Koehn, and S. Stahl. All other code is
Copyright (C) Michael Hahsler, Christian Buchta, and Kurt
Hornik.
NeedsCompilation: yes
Packaged: 2016-02-22 12:51:42 UTC; hahsler
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Repository: CRAN
Date/Publication: 2016-02-22 14:33:35

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'seriation' ...
** package 'seriation' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c RNG_wrapper.c -o RNG_wrapper.o
f95   -fpic  -g -O2  -c arsa.f -o arsa.o
f95   -fpic  -g -O2  -c bburcg.f -o bburcg.o
f95   -fpic  -g -O2  -c bbwrcg.f -o bbwrcg.o
f95   -fpic  -g -O2  -c bea.f -o bea.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c criterion.c -o criterion.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c dist.c -o dist.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c fprintf.c -o fprintf.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c greedy.c -o greedy.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c optimal.c -o optimal.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pathdist.c -o pathdist.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c stress.c -o stress.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o seriation.so RNG_wrapper.o arsa.o bburcg.o bbwrcg.o bea.o criterion.o dist.o fprintf.o greedy.o optimal.o pathdist.o stress.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/seriation/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'seriation'
    finding HTML links ... done
    Chameleon                               html  
    Irish                                   html  
    Munsingen                               html  
    Psych24                                 html  
    Townships                               html  
    VAT                                     html  
    Wood                                    html  
    Zoo                                     html  
    bertinplot                              html  
    col                                     html  
Rd warning: /tmp/RtmpWklv0Z/R.INSTALL106210368a17/seriation/man/col.Rd:37: missing file link 'colorRampPalette'
    criterion                               html  
    criterion_methods                       html  
    data                                    html  
    dissimilarity                           html  
    dissplot                                html  
    get_order                               html  
    hmap                                    html  
    permutation                             html  
    permutation_matrix                      html  
    permutation_vector                      html  
    permute                                 html  
    pimage                                  html  
    register_DendSer                        html  
    register_GA                             html  
    reorder_hclust                          html  
Rd warning: /tmp/RtmpWklv0Z/R.INSTALL106210368a17/seriation/man/reorder_hclust.Rd:46: missing file link 'reorder.hclust'
    robinson                                html  
    seriate                                 html  
    seriation_methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seriation)
Making 'packages.html' ... done