siggenes

Package: siggenes
Version: 1.46.0
Date: 2012-03-05
Title: Multiple testing using SAM and Efron's empirical Bayes
approaches
Author: Holger Schwender
Maintainer: Holger Schwender <holger.schw@gmx.de>
Depends: methods, Biobase, multtest, splines, graphics
Imports: stats4
Suggests: affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
Description: Identification of differentially expressed genes and
estimation of the False Discovery Rate (FDR) using both the
Significance Analysis of Microarrays (SAM) and the Empirical
Bayes Analyses of Microarrays (EBAM).
License: LGPL (>= 2)
biocViews: MultipleComparison, Microarray, GeneExpression, SNP,
ExonArray, DifferentialExpression
NeedsCompilation: no
Packaged: 2016-05-04 02:38:53 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'siggenes' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'siggenes'
Creating a generic function for 'identify' from package 'graphics' in package 'siggenes'
** help
*** installing help indices
  converting help for package 'siggenes'
    finding HTML links ... done
    EBAM-class                              html  
    FindA0-class                            html  
    SAM-class                               html  
    chisq.ebam                              html  
    chisq.stat                              html  
    d.stat                                  html  
    delta.plot                              html  
    denspr                                  html  
    ebam                                    html  
    ebamControl                             html  
    find.a0                                 html  
    findDelta                               html  
    fudge2                                  html  
    fuzzy.ebam                              html  
Rd warning: /tmp/Rtmpud1Z1w/R.INSTALL77d928a5b758/siggenes/man/fuzzy.ebam.Rd:29: missing file link 'getMatFuzzy'
    help.ebam                               html  
    help.finda0                             html  
    help.sam                                html  
    limma2sam                               html  
    link.genes                              html  
    link.siggenes                           html  
    list.siggenes                           html  
    md.plot                                 html  
    nclass.wand                             html  
    pi0.est                                 html  
    plotArguments                           html  
    plotFindArguments                       html  
    qvalue.cal                              html  
    rowWilcoxon                             html  
    sam                                     html  
    sam.plot2                               html  
    samControl                              html  
    siggenes-internal                       html  
    siggenes2excel                          html  
    siggenes2html                           html  
    sumSAM-class                            html  
    trend.ebam                              html  
    trend.stat                              html  
    wilc.ebam                               html  
    wilc.stat                               html  
    z.ebam                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (siggenes)
Making 'packages.html' ... done