Last data update: 2014.03.03
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simpleaffy
Package: simpleaffy
Title: Very simple high level analysis of Affymetrix data
Version: 2.48.0
Author: Crispin J Miller
Description: Provides high level functions for reading Affy .CEL files,
phenotypic data, and then computing simple things with it, such
as t-tests, fold changes and the like. Makes heavy use of the
affy library. Also has some basic scatter plot functions and
mechanisms for generating high resolution journal figures...
Maintainer: Crispin Miller <cmiller@picr.man.ac.uk>
Depends: R (>= 2.0.0), methods, utils, grDevices, graphics, stats,
BiocGenerics (>= 0.1.12), Biobase, affy (>= 1.33.6),
genefilter, gcrma
Imports: methods, utils, grDevices, graphics, stats, BiocGenerics,
Biobase, affy, genefilter, gcrma
License: GPL (>= 2)
URL: http://www.bioconductor.org
http://bioinformatics.picr.man.ac.uk/simpleaffy/
LazyLoad: yes
biocViews: Microarray, OneChannel, QualityControl, Preprocessing,
Transcription, DataImport, DifferentialExpression, Annotation,
ReportWriting, Visualization
NeedsCompilation: yes
Packaged: 2016-05-04 02:39:53 UTC; biocbuild
● BiocViews: Annotation, DataImport, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Transcription, Visualization
●
4 images,
37 functions,
1 datasets
●
Reverse Depends: 1
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'simpleaffy' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:30: warning: passing argument 1 of 'REprintf' from incompatible pointer type [-Wincompatible-pointer-types]
if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
^
In file included from /home/ddbj/local/lib64/R/include/R.h:72:0,
from simpleaffy.c:5:
/home/ddbj/local/lib64/R/include/R_ext/Print.h:40:6: note: expected 'const char *' but argument is of type 'struct _IO_FILE *'
void REprintf(const char *, ...);
^
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o simpleaffy.so simpleaffy.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'simpleaffy'
finding HTML links ... done
PairComp-class html
QCStats-class html
all.present html
all.present.in.group html
bg.correct.sa html
call.exprs html
detection.p.val html
get.annotation html
get.array.indices html
get.array.subset html
get.array.subset.affy html
get.fold.change.and.t.test html
hmap.colors html
hmap.eset html
hmap.pc html
journalpng html
justMAS html
pairwise.comparison html
pairwise.filter html
plot.pairwise.comparison html
plot.qc.stats html
qc html
qc.affy html
qc.get.alpha1 html
qc.get.array html
qc.get.probes html
qc.get.ratios html
qc.get.spikes html
qc.have.params html
qc.ok html
qc.read.file html
qc.stats html
read.affy html
read.affy.mixed html
setQCEnvironment html
simpleaffy-deprecated html
standard.pearson html
trad.scatter.plot html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simpleaffy)
Making 'packages.html' ... done
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