spacodiR

Package: spacodiR
Type: Package
Title: Spatial and Phylogenetic Analysis of Community Diversity
Version: 0.13.0115
Date: 2013-01-15
Author: Jonathan Eastman, Timothy Paine, and Olivier Hardy
Maintainer: Jonathan Eastman <jonathan.eastman@gmail.com>
Depends: picante, colorspace, Rcpp
LinkingTo: Rcpp
Description: SPACoDi is primarily designed to characterise the
structure and phylogenetic diversity of communities using
abundance or presence-absence data of species among community
plots.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2013-01-15 19:41:16 UTC; jeastman
Repository: CRAN
Date/Publication: 2013-01-16 10:08:49

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'spacodiR' ...
** package 'spacodiR' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c cophen.cpp -o cophen.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c spacodi.c -o spacodi.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o spacodiR.so cophen.o spacodi.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/spacodiR/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'spacodiR'
    finding HTML links ... done
    as.phylocom                             html  
    as.picante                              html  
    as.spacodi                              html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/as.spacodi.Rd:15: missing file link 'picante'
    match.spacodi.data                      html  
    phy.deresolve                           html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/phy.deresolve.Rd:19: missing file link 'di2multi'
    phy.dotplot                             html  
    phy.nodetimes                           html  
    resamp.1a                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.1a.Rd:34: missing file link 'randomizeMatrix'
    resamp.1s                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.1s.Rd:28: missing file link 'randomizeMatrix'
    resamp.2s                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.2s.Rd:28: missing file link 'randomizeMatrix'
    resamp.2x                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.2x.Rd:35: missing file link 'randomizeMatrix'
    resamp.3i                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.3i.Rd:29: missing file link 'randomizeMatrix'
    resamp.3t                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.3t.Rd:34: missing file link 'randomizeMatrix'
    resamp.3x                               html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/resamp.3x.Rd:38: missing file link 'randomizeMatrix'
    resamp.phy                              html  
    resamp.test                             html  
    sp.example                              html  
    spacodi-internal                        html  
    spacodi-package                         html  
    spacodi.by.nodes                        html  
Rd warning: /tmp/RtmpKzPqiM/R.INSTALL7bddcf753c1/spacodiR/man/spacodi.by.nodes.Rd:87: missing file link 'randomizeMatrix'
    spacodi.calc                            html  
    spacodi.permutplot                      html  
    spacodi.treeplot                        html  
    write.spacodi.data                      html  
** building package indices
** testing if installed package can be loaded
* DONE (spacodiR)
Making 'packages.html' ... done