spam

Package: spam
Version: 1.3-0
Date: 2015-10-24
Authors@R: c(person("Reinhard", "Furrer", role = c("aut", "cre"),
email = "reinhard.furrer@math.uzh.ch"),
person("Florian", "Gerber", role = "ctb",
email = "florian.gerber@math.uzh.ch"))
Author: Reinhard Furrer [aut, cre], Florian Gerber [ctb]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Depends: R (>= 3.0), grid
Imports: methods
Suggests: fields, Matrix, R.rsp, truncdist
VignetteBuilder: R.rsp
Description: Set of functions for sparse matrix algebra.
Differences with SparseM/Matrix are:
(1) we only support (essentially) one sparse matrix format,
(2) based on transparent and simple structure(s),
(3) tailored for MCMC calculations within GMRF.
(4) S3 and S4 like-"compatible" ... and it is fast.
LazyLoad: Yes
LazyData: Yes
License: LGPL-2
Title: SPArse Matrix
URL: http://www.math.uzh.ch/furrer/software/spam/
NeedsCompilation: yes
Packaged: 2015-10-27 07:54:32 UTC; furrer
Repository: CRAN
Date/Publication: 2015-10-29 08:35:06

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'spam' ...
** package 'spam' successfully unpacked and MD5 sums checked
** libs
f95   -fpic  -g -O2  -c bckslvmodified.f -o bckslvmodified.o
f95   -fpic  -g -O2  -c cholmodified.f -o cholmodified.o
f95   -fpic  -g -O2  -c dist.f -o dist.o
f95   -fpic  -g -O2  -c fromsparsekit.f -o fromsparsekit.o
f95   -fpic  -g -O2  -c kronecker.f -o kronecker.o
f95   -fpic  -g -O2  -c permutation.f -o permutation.o
f95   -fpic  -g -O2  -c rowcolstats.f -o rowcolstats.o
f95   -fpic  -g -O2  -c spamown.f -o spamown.o
f95   -fpic  -g -O2  -c spamown2.f -o spamown2.o
f95   -fpic  -g -O2  -c xybind.f -o xybind.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o spam.so bckslvmodified.o cholmodified.o dist.o fromsparsekit.o kronecker.o permutation.o rowcolstats.o spamown.o spamown2.o xybind.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/spam/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'spam'
Creating a generic function for 'summary' from package 'base' in package 'spam'
Creating a generic function for 'diag' from package 'base' in package 'spam'
Creating a generic function for 'diag<-' from package 'base' in package 'spam'
Creating a generic function for 't' from package 'base' in package 'spam'
Creating a generic function for 'as.matrix' from package 'base' in package 'spam'
Creating a generic function for 'all.equal' from package 'base' in package 'spam'
Creating a generic function for 'isSymmetric' from package 'base' in package 'spam'
Creating a generic function for 'diff' from package 'base' in package 'spam'
Creating a generic function for 'norm' from package 'base' in package 'spam'
Creating a generic function for 'image' from package 'graphics' in package 'spam'
Creating a generic function for 'plot' from package 'graphics' in package 'spam'
Creating a generic function for 'rowSums' from package 'base' in package 'spam'
Creating a generic function for 'colSums' from package 'base' in package 'spam'
Creating a generic function for 'rowMeans' from package 'base' in package 'spam'
Creating a generic function for 'colMeans' from package 'base' in package 'spam'
Creating a new generic function for 'backsolve' in package 'spam'
Creating a new generic function for 'forwardsolve' in package 'spam'
Creating a generic function for 'chol' from package 'base' in package 'spam'
Creating a generic function for 'solve' from package 'base' in package 'spam'
Creating a generic function for 'chol2inv' from 'base' in package 'spam'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'spam'
Creating a generic function for 'determinant' from package 'base' in package 'spam'
Creating a generic function for 'head' from package 'utils' in package 'spam'
Creating a generic function for 'tail' from package 'utils' in package 'spam'
Creating a generic function for 'crossprod' from package 'base' in package 'spam'
Creating a generic function for 'tcrossprod' from package 'base' in package 'spam'
Creating a generic function for 'rbind' from package 'base' in package 'spam'
Creating a generic function for 'cbind' from package 'base' in package 'spam'
** help
*** installing help indices
  converting help for package 'spam'
    finding HTML links ... done
    Oral                                    html  
    UScounties                              html  
    USprecip                                html  
    adjacency                               html  
    allequal                                html  
    apply                                   html  
    bandwidth                               html  
    bdiag                                   html  
    chol                                    html  
    circulant                               html  
    cleanup                                 html  
    coerce                                  html  
    coercion                                html  
    complexity                              html  
    constructors                            html  
    cov                                     html  
    crossprod                               html  
    det                                     html  
    diag                                    html  
    diff                                    html  
    dim                                     html  
    display                                 html  
    foreign                                 html  
Rd warning: /tmp/Rtmpvqu89D/R.INSTALL1f1313388cf5/spam/man/foreign.Rd:42: missing file link 'matrix.csr'
    germany                                 html  
    germanydata                             html  
    grid_trace2                             html  
    grid_zoom                               html  
    headtail                                html  
    history.spam                            html  
    image                                   html  
    import                                  html  
    isSymmetric                             html  
    kronecker                               html  
    landkreis                               html  
    lu.tri                                  html  
    makeprec                                html  
    math                                    html  
    math2                                   html  
    methods                                 html  
    mle                                     html  
    nearestdist                             html  
    operations                              html  
    options                                 html  
    ordering                                html  
    pad                                     html  
    permutation                             html  
    powerboost                              html  
    precmat                                 html  
    print                                   html  
    rdist                                   html  
    rmvnorm                                 html  
    rmvnorm.const                           html  
    rowcolstats                             html  
    s3only                                  html  
    solve                                   html  
    spam-class                              html  
    spam-deprecated                         html  
    spam-package                            html  
    spam.chol.NgPeyton-class                html  
    spam.creation                           html  
    spam.internal                           html  
    summary                                 html  
    todo                                    html  
    toeplitz                                html  
    triplet                                 html  
    version                                 html  
Rd warning: /tmp/Rtmpvqu89D/R.INSTALL1f1313388cf5/spam/man/version.Rd:54: missing file link 'R.version'
    xybind                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spam)
Making 'packages.html' ... done