splineTCDiffExpr

Package: splineTCDiffExpr
Type: Package
Title: Time-course differential gene expression data analysis using
spline regression models followed by gene association network
reconstruction
Version: 0.99.4
Date: 2015-09-30
Author: Agata Michna
Maintainer: Herbert Braselmann <braselm@helmholtz-muenchen.de>, Agata Michna <agata.michna@helmholtz-muenchen.de>
Depends: R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines,
GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs
Description: This package provides functions for differential gene
expression analysis of gene expression time-course data.
Natural cubic spline regression models are used. Identified
genes may further be used for pathway enrichment analysis
and/or the reconstruction of time dependent gene regulatory
association networks.
License: GPL-3
biocViews: GeneExpression, DifferentialExpression, TimeCourse,
Regression, GeneSetEnrichment, NetworkEnrichment,
NetworkInference, GraphAndNetwork
VignetteBuilder: knitr
Suggests: knitr
NeedsCompilation: no
Packaged: 2016-01-20 06:30:15 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'splineTCDiffExpr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'splineTCDiffExpr'
    finding HTML links ... done
    TCsimData                               html  
    networkProperties                       html  
    finding level-2 HTML links ... done

    pathEnrich                              html  
    splineDiffExprs                         html  
    splineNetRecon                          html  
    splinePlot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (splineTCDiffExpr)
Making 'packages.html' ... done