stpm

Package: stpm
Type: Package
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Version: 1.3.1
Date: 2016-05-24
Author: I. Y. Zhbannikov, I. V. Akushevich, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see: (i) "Life tables
with covariates: Dynamic model for nonlinear analysis of longitudinal data"
by Akushevich, I. et al. (2005), Mathematical Population Studies 12(2), 51(80),
<DOI:10.1080/08898480590932296>; (ii) "Stochastic model for analysis of
longitudinal data on aging and mortality" by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(iii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
License: GPL
Imports: Rcpp (>= 0.11.1)
LinkingTo: Rcpp,RcppArmadillo
Depends: mice, sas7bdat, stats, nloptr, survival, tools
Suggests: knitr (>= 1.11)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-05-24 02:01:27 UTC; ilya
Repository: CRAN
Date/Publication: 2016-05-24 05:39:03

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'stpm' ...
** package 'stpm' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c simdataND.cpp -o simdataND.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c spm_1D.cpp -o spm_1D.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c spm_discrete.cpp -o spm_discrete.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c spm_integral_MD.cpp -o spm_integral_MD.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o stpm.so simdataND.o spm_1D.o spm_discrete.o spm_integral_MD.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/stpm/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'stpm'
    finding HTML links ... done
    longdat                                 html  
    prepare_data                            html  
    prepare_data_cont                       html  
    prepare_data_discr                      html  
    simdata_cont                            html  
    simdata_discr                           html  
    simdata_gen                             html  
    simdata_time_dep                        html  
    spm                                     html  
    spm_continuous                          html  
    spm_discrete                            html  
    spm_gen                                 html  
    spm_projection                          html  
    spm_time_dep                            html  
    stpm                                    html  
    trim                                    html  
    trim.leading                            html  
    trim.trailing                           html  
    vitstat                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (stpm)
Making 'packages.html' ... done