surface

Package: surface
Type: Package
Title: Fitting Hansen Models to Investigate Convergent Evolution
Version: 0.4-1
Date: 2014-02-14
Author: Travis Ingram
Maintainer: Travis Ingram <travis.ingram@otago.ac.nz>
Depends: R (>= 2.6), ape, ouch, MASS, geiger
Suggests: igraph
Description: SURFACE is a data-driven phylogenetic comparative method for fitting stabilizing selection models to continuous trait data, building on the ouch package. The main functions fit a series of Hansen models using stepwise AIC, then identify cases of convergent evolution where multiple lineages have shifted to the same adaptive peak.
License: GPL (>= 2)
URL: http://www.people.fas.harvard.edu/~ingram/web/surface.html
Packaged: 2014-02-14 09:32:26 UTC; ingram
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-14 11:22:36

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'surface' ...
** package 'surface' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'surface'
    finding HTML links ... done
    convertTreeData                         html  
    getAIC                                  html  
    getBranchTimes                          html  
    ouchDescendants                         html  
    propRegMatch                            html  
    repaint                                 html  
    runSurface                              html  
    startingModel                           html  
    surface-package                         html  
    surfaceAICPlot                          html  
    surfaceBackward                         html  
    surfaceDemo                             html  
    surfaceForward                          html  
    surfaceSimulate                         html  
    surfaceSummary                          html  
    surfaceTreePlot                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (surface)
Making 'packages.html' ... done