survcomp

Package: survcomp
Type: Package
Title: Performance Assessment and Comparison for Survival Analysis
Version: 1.22.0
Date: 2015-07-21
Description: R package providing functions to assess and to compare the performance of risk prediction (survival) models.
biocViews: GeneExpression, DifferentialExpression, Visualization
Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>, Markus Schroeder <markus.schroeder@ucdconnect.ie>, Catharina Olsen <colsen@ulb.ac.be>
Depends: survival, prodlim, R (>= 2.10)
Suggests: Hmisc, CPE, clinfun, Biobase
Imports: ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid,
rmeta
License: Artistic-2.0
URL: http://www.pmgenomics.ca/bhklab/
NeedsCompilation: yes
Packaged: 2016-05-04 04:00:32 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'survcomp' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c concordance.index.c -o concordance.index.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o survcomp.so concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/survcomp/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'survcomp'
    finding HTML links ... done
    D.index                                 html  
Rd warning: /tmp/Rtmpil7cRt/R.INSTALL57503f38864d/survcomp/man/D.index.Rd:41: missing file link 'normOrder'
    breastCancerData                        html  
    censor.time                             html  
    cindex.comp                             html  
    cindex.comp.meta                        html  
    combine.est                             html  
    combine.test                            html  
    concordance.index                       html  
    cvpl                                    html  
    dindex.comp                             html  
    dindex.comp.meta                        html  
    fisherz                                 html  
    forestplot.surv                         html  
    getsurv2                                html  
    hazard.ratio                            html  
    hr.comp                                 html  
    hr.comp.meta                            html  
    hr.comp2                                html  
    iauc.comp                               html  
    ibsc.comp                               html  
    km.coxph.plot                           html  
    logpl                                   html  
    mainz7g                                 html  
    metaplot.surv                           html  
    finding level-2 HTML links ... done

    mrmr.cindex                             html  
    mrmr.cindex.ensemble                    html  
    nki7g                                   html  
    no.at.risk                              html  
    sbrier.score2proba                      html  
    score2proba                             html  
    survcomp-package                        html  
    td.sens.spec                            html  
    tdrocc                                  html  
    test.hetero.est                         html  
    test.hetero.test                        html  
    transbig7g                              html  
    unt7g                                   html  
    upp7g                                   html  
    vdx7g                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survcomp)
Making 'packages.html' ... done