synRNASeqNet

Package: synRNASeqNet
Type: Package
Title: Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
Version: 1.0
Date: 2015-04-07
Author: Luciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli
Maintainer: Luciano Garofano <lucianogarofano88@gmail.com>
Depends: R (>= 3.1.1), parallel, parmigene, GenKern, igraph
URL: https://github.com/lucgar/synRNASeqNet
Imports: KernSmooth
Description: It implements various estimators of mutual information, such as
the maximum likelihood and the Millow-Madow estimator, various Bayesian
estimators, the shrinkage estimator, and the Chao-Shen estimator. It also
offers wrappers to the kNN and kernel density estimators. Furthermore, it
provides various index of performance evaluation such as precision, recall,
FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way
of generating synthetic RNA-Seq Network with known dependence structure.
License: GPL (>= 3)
NeedsCompilation: no
Packaged: 2015-04-20 08:45:39 UTC; luciano
Repository: CRAN
Date/Publication: 2015-04-20 11:55:18

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'synRNASeqNet' ...
** package 'synRNASeqNet' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'synRNASeqNet'
    finding HTML links ... done
    DiscriminantPower                       html  
    Likelihoods                             html  
    YoudenIndex                             html  
    aucDisc                                 html  
    entropyBayes                            html  
    entropyCS                               html  
    entropyML                               html  
    entropyMM                               html  
    entropyShrink                           html  
    mainNetFunction                         html  
    parEntropyEstimate                      html  
    parMIEstimate                           html  
    parMIKD                                 html  
    performanceIndex                        html  
    performanceNET                          html  
    plotPR                                  html  
    plotROC                                 html  
    simulatedData                           html  
    synRNASeqNet-internal                   html  
    synRNASeqNet-package                    html  
** building package indices
** testing if installed package can be loaded
* DONE (synRNASeqNet)
Making 'packages.html' ... done