synapter

Package: synapter
Type: Package
Title: Label-free data analysis pipeline for optimal identification and
quantitation
Version: 1.14.2
Author: Laurent Gatto, Nick J. Bond and Pavel V. Shliaha
and Sebastian Gibb.
Maintainer: Laurent Gatto <lg390@cam.ac.uk> and
Sebastian Gibb <mail@sebastiangibb.de>
Depends: R (>= 2.15), methods, MSnbase
Imports: hwriter, RColorBrewer, lattice, qvalue, multtest, utils,
Biobase, knitr, Biostrings, cleaver, BiocParallel
Suggests: synapterdata, xtable, tcltk, BiocStyle
Description: The synapter package provides functionality to reanalyse
label-free proteomics data acquired on a Synapt G2 mass
spectrometer. One or several runs, possibly processed with
additional ion mobility separation to increase identification
accuracy can be combined to other quantitation files to
maximise identification and quantitation accuracy.
License: GPL-2
URL: http://lgatto.github.com/synapter/
VignetteBuilder: knitr
biocViews: MassSpectrometry, Proteomics, GUI
NeedsCompilation: no
Packaged: 2016-05-16 03:30:37 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'synapter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'synapter'
    finding HTML links ... done
    MasterFdrResults-class                  html  
    MasterPeptides-class                    html  
    Synapter                                html  
    defunct                                 html  
    estimateMasterFdr                       html  
    inspectPeptideScores                    html  
    makeMaster                              html  
    synapter-package                        html  
    synapterGuide                           html  
    synapterTinyData                        html  
    synergise                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (synapter)
Making 'packages.html' ... done