targetscan.Mm.eg.db

Package: targetscan.Mm.eg.db
Title: TargetScan miRNA target predictions for mouse
Description: TargetScan miRNA target predictions for mouse assembled
using data from the TargetScan website. TargetScan predicts
biological targets of miRNAs by searching for the presence of
conserved 8mer and 7mer sites that match the seed region of each
miRNA. Also identified are sites with mismatches in the seed region
that are compensated by conserved 3' pairing. In mammals,
predictions are ranked based on the predicted efficacy of targeting
as calculated using the context scores of the sites.
Version: 0.6.1
Author: Gabor Csardi <Gabor.Csardi@unil.ch>
Maintainer: James F. Reid <james.reid@ifom-ieo-campus.it>
Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3)
Imports: methods, AnnotationDbi
License: file LICENSE
License_restricts_use: no
biocViews: AnnotationData, FunctionalAnnotation
Packaged: 2013-05-28 20:40:30 UTC; mcarlson

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'targetscan.Mm.eg.db' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'targetscan.Mm.eg.db'
    finding HTML links ... done
    targetscan.Mm.egBASE                    html  
    targetscan.Mm.egFAMILY2MIRBASE          html  
    targetscan.Mm.egMAPCOUNTS               html  
    targetscan.Mm.egMIRBASE2FAMILY          html  
    targetscan.Mm.egMIRNA                   html  
    targetscan.Mm.egTARGETS                 html  
    targetscan.Mm.egTARGETSFULL             html  
    targetscan.Mm.eg_dbconn                 html  
    targetscan.Mm.egundocumented            html  
** building package indices
** testing if installed package can be loaded
* DONE (targetscan.Mm.eg.db)
Making 'packages.html' ... done