timereg

Package: timereg
Title: Flexible Regression Models for Survival Data
Version: 1.8.9
Date: 2015-05-28
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy Silver
and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast cumulative
residuals, excess risk models and more. Flexible competing risks regression
including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in the 'ahaz' package.
LazyLoad: yes
URL: https://github.com/scheike/timereg.git
Depends: R (>= 2.15), survival,
Imports: lava, numDeriv
License: GPL (>= 2)
Collate: 'aalenC.r' 'aalen-des.r' 'aalen.r' 'additive-compSs.r'
'base.r' 'clusterindex-reshape.r' 'comprisk.r' 'comprisk.ipw.r'
'cox-aalen.r' 'cox.ipw.r' 'Cpred.r' 'Csmooth.r' 'dynadd.r'
'event.r' 'Gprop-odds.r' 'krylow.pls.r' 'kmplot.r' 'mgresid.r'
'new.aalen.r' 'new.cox-aalen.r' 'new.dynreg.r'
'new.pe-sasieni.r' 'new.prop-excess.r' 'new.timecox.r'
'plots.r' 'predict-timereg.r' 'glm-comprisk.r' 'prop-excess.r'
'prop-odds.r' 'prop-odds-subdist.r' 'read-design.r'
'restricted.residual.mean.r' 'ipcw-residualmean.r'
'two-stage-reg.r' 'timecox.r'
NeedsCompilation: yes
Packaged: 2015-05-28 06:26:21 UTC; thomas
Repository: CRAN
Date/Publication: 2015-05-28 10:42:35

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'timereg' ...
** package 'timereg' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Gprop-odds-subdist.c -o Gprop-odds-subdist.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Gprop-odds.c -o Gprop-odds.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c aalen-test.c -o aalen-test.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c aalen.c -o aalen.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c aalenC.c -o aalenC.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c additive-compSs.c -o additive-compSs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c additive-pls-new.c -o additive-pls-new.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c breslow.c -o breslow.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c comprisk.c -o comprisk.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c comptest-cmprsk.c -o comptest-cmprsk.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c comptest.c -o comptest.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cox-aalen-lwy-resamp.c -o cox-aalen-lwy-resamp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cox-aalen-stratum.c -o cox-aalen-stratum.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cox-aalen.c -o cox-aalen.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c dynadd.c -o dynadd.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ipcw-residualmean.c -o ipcw-residualmean.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kim-kim.c -o kim-kim.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c matrix.c -o matrix.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c mgresid.c -o mgresid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pava.c -o pava.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pe-sasieni.c -o pe-sasieni.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pred.c -o pred.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c prop-excess.c -o prop-excess.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c prop-odds-subdist2.c -o prop-odds-subdist2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c prop-odds.c -o prop-odds.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smooth.c -o smooth.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smooth2.c -o smooth2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c timecox.c -o timecox.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c two-stage-reg.c -o two-stage-reg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c unifConfBandResampling.c -o unifConfBandResampling.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o timereg.so Gprop-odds-subdist.o Gprop-odds.o aalen-test.o aalen.o aalenC.o additive-compSs.o additive-pls-new.o breslow.o comprisk.o comptest-cmprsk.o comptest.o cox-aalen-lwy-resamp.o cox-aalen-stratum.o cox-aalen.o dynadd.o ipcw-residualmean.o kim-kim.o matrix.o mgresid.o pava.o pe-sasieni.o pred.o prop-excess.o prop-odds-subdist2.o prop-odds.o smooth.o smooth2.o timecox.o two-stage-reg.o unifConfBandResampling.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/timereg/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'timereg'
    finding HTML links ... done
    Gprop.odds                              html  
    TRACE                                   html  
    aalen                                   html  
    bmt                                     html  
    cd4                                     html  
    comp.risk                               html  
    const                                   html  
    cox                                     html  
    cox.aalen                               html  
    csl                                     html  
    cum.residuals                           html  
    diabetes                                html  
    dynreg                                  html  
    internal-addreg                         html  
    krylow.pls                              html  
    mela.pop                                html  
    melanoma                                html  
    pe.sasieni                              html  
    plot.aalen                              html  
    plot.cum.residuals                      html  
    plot.dynreg                             html  
    predict.timereg                         html  
    prep.comp.risk                          html  
    print.aalen                             html  
    prop                                    html  
    prop.excess                             html  
    prop.odds                               html  
    prop.odds.subdist                       html  
    res.mean                                html  
    restricted.residual.mean                html  
    summary.aalen                           html  
    summary.cum.residuals                   html  
    timecox                                 html  
    two.stage.reg                           html  
    wald.test                               html  
** building package indices
** testing if installed package can be loaded
* DONE (timereg)
Making 'packages.html' ... done