Last data update: 2014.03.03
|
topGO
Package: topGO
Type: Package
Title: Enrichment Analysis for Gene Ontology
Version: 2.24.0
Date: 2016-02-03
Author: Adrian Alexa, Jorg Rahnenfuhrer
Maintainer: Adrian Alexa <adrian.alexa@gmail.com>
Description: topGO package provides tools for testing GO terms while
accounting for the topology of the GO graph. Different test
statistics and different methods for eliminating local
similarities and dependencies between GO terms can be
implemented and applied.
License: LGPL
Depends: R (>= 2.10.0), methods, BiocGenerics (>= 0.13.6), graph (>=
1.14.0), Biobase (>= 2.0.0), GO.db (>= 2.3.0), AnnotationDbi
(>= 1.7.19), SparseM (>= 0.73)
Imports: lattice, matrixStats, DBI
Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest,
Rgraphviz, globaltest
Collate: AllClasses.R topGOmethods.R topGOgraph.R topGOalgo.R
topGOfunctions.R topGOannotations.R topGOtests.R topGOviz.R
zzz.R
biocViews: Microarray, Visualization
NeedsCompilation: no
Packaged: 2016-05-04 03:00:37 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'topGO'
** help
*** installing help indices
converting help for package 'topGO'
finding HTML links ... done
GOTests html
GOdata html
annFUN html
classicCount-class html
classicExpr-class html
classicScore-class html
dagFunctions html
diagnosticMethods html
elimCount-class html
elimExpr-class html
elimScore-class html
geneList html
getPvalues html
getSigGroups html
groupGOTerms html
groupStats-class html
inducedGraph html
parentChild-class html
printGraph-methods html
topGO-package html
topGOdata-class html
topGOresult-class html
weightCount-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* DONE (topGO)
Making 'packages.html' ... done
|