tractor.base

Package: tractor.base
Version: 3.0.2
Date: 2016-06-10
Title: Read, Manipulate and Visualise Magnetic Resonance Images
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Imports: methods, ore (>= 1.3.0), reportr
Suggests: mmand, png
Enhances: oro.nifti
Description: Functions for working with magnetic resonance images. Analyze,
NIfTI-1, NIfTI-2 and MGH format images can be read and written; DICOM files
can only be read.
Encoding: UTF-8
LazyLoad: yes
LazyData: yes
License: GPL-2
URL: http://www.tractor-mri.org.uk
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-13 10:54:09 UTC; jon
Repository: CRAN
Date/Publication: 2016-06-13 16:03:49

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'tractor.base' ...
** package 'tractor.base' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Warning in .checkFieldsInMethod(def, fieldNames, allMethods) :
  local assignment to field name will not change the field:
    voxelDimUnits <- "unknown"; source <- ""; tags <- structure(as.list(tags$values), names = tags$keys); dim(data) <- imageDims; imageDims <- dim(data); origin <- c(as.numeric(origin), rep(0, 3 - length(origin))); origin <- as.numeric(origin)[1:3]
 Did you mean to use "<<-"? ( in method "initialize" for class "MriImage")
in method for 'coerce' with signature '"MriImage","nifti"': no definition for class "nifti"
in method for 'coerce' with signature '"nifti","MriImage"': no definition for class "nifti"
** help
*** installing help indices
  converting help for package 'tractor.base'
    finding HTML links ... done
    DicomMetadata-class                     html  
    MriImage-class                          html  
    SerialisableObject-class                html  
    SparseArray-class                       html  
    asMriImage                              html  
    colourScales                            html  
    deduplicate                             html  
    emptyMatrix                             html  
    equivalent                              html  
    execute                                 html  
    files                                   html  
    implode                                 html  
    index                                   html  
    mergeMriImages                          html  
    neighbourhoodInfo                       html  
    newSparseArrayWithData                  html  
    nilObject                               html  
    paths                                   html  
    pluralise                               html  
    printLabelledValues                     html  
    finding level-2 HTML links ... done

    promote                                 html  
    readDicomDirectory                      html  
    readDicomFile                           html  
    serialisation                           html  
    sortDicomDirectories                    html  
    threadSafeTempFile                      html  
    tractor.base-deprecated                 html  
    vector                                  html  
    viewer                                  html  
    visualisation                           html  
** building package indices
** testing if installed package can be loaded
* DONE (tractor.base)
Making 'packages.html' ... done