treeHFM

Package: treeHFM
Version: 1.0.0
Date: 2016-06-4
Title: Hidden Factor Graph Models
Author: Henrik Failmezger, Achim Tresch
Maintainer: Henrik Failmezger <Henrik.Failmezger@googlemail.com>
Depends: mclust
Collate: HFMfit.R HFMviterbi.R DrawViterbiTree.R
Description: Hidden Factor graph models generalise Hidden Markov Models to tree structured data. The distinctive feature of 'treeHFM' is that it learns a transition matrix for first order (sequential) and for second order (splitting) events. It can be applied to all discrete and continuous data that is structured as a binary tree. In the case of continuous observations, 'treeHFM' has Gaussian distributions as emissions.
License: GPL (>= 2)
biocViews: HiddenMarkovModel, Clustering
LazyLoad: yes
Packaged: 2016-06-06 18:27:28 UTC; henrikfailmezger
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-06-06 23:51:17

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'treeHFM' ...
** package 'treeHFM' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c BaumWelch.cpp -o BaumWelch.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c EmissionFunction.cpp -o EmissionFunction.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c FactorGraph.cpp -o FactorGraph.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c MaxSum.cpp -o MaxSum.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c MemoryAllocation.cpp -o MemoryAllocation.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c MultivariateGaussian.cpp -o MultivariateGaussian.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c ParamContainerEmissions.cpp -o ParamContainerEmissions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c RWrapperBM.cpp -o RWrapperBM.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c RWrapperFunctions.cpp -o RWrapperFunctions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c RWrapperMS.cpp -o RWrapperMS.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c SumProduct.cpp -o SumProduct.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c helpFunctions.cpp -o helpFunctions.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -w -D_RDLL_ -fopenmp  -fpic  -g -O2  -c matUtils.cpp -o matUtils.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o treeHFM.so BaumWelch.o EmissionFunction.o FactorGraph.o MaxSum.o MemoryAllocation.o MultivariateGaussian.o ParamContainerEmissions.o RWrapperBM.o RWrapperFunctions.o RWrapperMS.o SumProduct.o helpFunctions.o matUtils.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/treeHFM/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'treeHFM'
    finding HTML links ... done
    DrawViterbiTree                         html  
    HFMfit                                  html  
    HFMviterbi                              html  
** building package indices
** testing if installed package can be loaded
* DONE (treeHFM)
Making 'packages.html' ... done