trustOptim

Package: trustOptim
Type: Package
Title: Trust Region Optimization for Nonlinear Functions with Sparse
Hessians
Version: 0.8.5
Date: 2015-02-04
Authors@R: person(given="Michael", family="Braun", email="braunm@smu.edu", role=c("aut","cre","cph"))
URL: http://coxprofs.cox.smu.edu/braunm
Description: Trust region algorithm for nonlinear optimization. Efficient when the Hessian of the objective function is sparse (i.e., relatively few nonzero cross-partial derivatives).
License: MPL (>= 2.0)
Depends: R (>= 3.1.2), Rcpp (>= 0.11.3), Matrix (>= 1.1.4)
Suggests: testthat, knitr
LinkingTo: Rcpp, RcppEigen (>= 0.3.2.3)
Copyright: (c) 2015 Michael Braun
VignetteBuilder: knitr
SystemRequirements: C++11
Packaged: 2015-02-04 18:36:16 UTC; braunm
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-02-04 21:16:22

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'trustOptim' ...
** package 'trustOptim' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/bits/locale_classes.h:40,
                 from /usr/include/c++/5/bits/ios_base.h:41,
                 from /usr/include/c++/5/ios:42,
                 from /usr/include/c++/5/ostream:38,
                 from /usr/include/c++/5/iterator:64,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:25,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/bits/locale_classes.h:40,
                 from /usr/include/c++/5/bits/ios_base.h:41,
                 from /usr/include/c++/5/ios:42,
                 from /usr/include/c++/5/ostream:38,
                 from /usr/include/c++/5/iterator:64,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:25,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I. -I../inst/include -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2 -c trustOptim.cpp -o trustOptim.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/common_R.hpp:22,
                 from trustOptim.cpp:17:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/stdexcept:39,
                 from /usr/include/c++/5/array:38,
                 from /usr/include/c++/5/tuple:39,
                 from /usr/include/c++/5/unordered_map:41,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp/platform/compiler.h:153,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp/r/headers.h:48,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/RcppCommon.h:29,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp.h:27,
                 from ../inst/include/common_R.hpp:21,
                 from trustOptim.cpp:17:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/common_R.hpp:22,
                 from trustOptim.cpp:17:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/stdexcept:39,
                 from /usr/include/c++/5/array:38,
                 from /usr/include/c++/5/tuple:39,
                 from /usr/include/c++/5/unordered_map:41,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp/platform/compiler.h:153,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp/r/headers.h:48,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/RcppCommon.h:29,
                 from /home/ddbj/local/lib64/R/library/Rcpp/include/Rcpp.h:27,
                 from ../inst/include/common_R.hpp:21,
                 from trustOptim.cpp:17:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o trustOptim.so RcppExports.o trustOptim.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/trustOptim/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'trustOptim'
    finding HTML links ... done
    binary-data                             html  
    binary                                  html  
    trust.optim                             html  
    trustOptim                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (trustOptim)
Making 'packages.html' ... done