Last data update: 2014.03.03
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tximport
Package: tximport
Version: 1.0.3
Title: Import and summarize transcript-level estimates for gene-level
analysis
Description: Imports transcript-level abundance, estimated counts and
transcript lengths, and summarizes into matrices for use with
downstream gene-level analysis packages. Average transcript
length, weighted by sample-specific transcript abundance
estimates, is provided as a matrix which can be used as an
offset for different expression of gene-level counts.
Author: Michael Love, Charlotte Soneson, Mark Robinson
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
License: GPL (>=2)
VignetteBuilder: knitr
Imports: utils
Suggests: knitr, testthat, tximportData,
TxDb.Hsapiens.UCSC.hg19.knownGene, readr (>= 0.2.2), limma,
edgeR, DESeq2 (>= 1.11.6)
biocViews: RNASeq, Transcription, GeneExpression, DataImport
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-19 05:53:15 UTC; biocbuild
● BiocViews: DataImport, GeneExpression, RNASeq, Transcription
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0 images,
1 functions,
0 datasets
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Reverse Depends: 0
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'tximport' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'tximport'
finding HTML links ... done
tximport html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tximport)
Making 'packages.html' ... done
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