unmarked

Package: unmarked
Version: 0.11-0
Date: 2015-08-14
Type: Package
Title: Models for Data from Unmarked Animals
Author: Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler, Rebecca Hutchinson
Maintainer: Andy Royle <aroyle@usgs.gov>
Depends: R (>= 2.12.0), methods, reshape, lattice, Rcpp (>= 0.8.0)
Imports: graphics, stats, utils, plyr, raster
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Collate: 'classes.R' 'unmarkedEstimate.R' 'mapInfo.R' 'unmarkedFrame.R'
'unmarkedFit.R' 'utils.R' 'getDesign.R' 'colext.R' 'distsamp.R'
'multinomPois.R' 'occu.R' 'occuRN.R' 'pcount.R' 'gmultmix.R'
'pcountOpen.R' 'gdistsamp.R' 'unmarkedFitList.R'
'unmarkedLinComb.R' 'ranef.R' 'boot.R' 'occuFP.R' 'gpcount.R'
'occuPEN.R'
LinkingTo: Rcpp, RcppArmadillo
SystemRequirements: GNU make
URL: http://groups.google.com/group/unmarked
https://sites.google.com/site/unmarkedinfo/home,
http://github.com/ianfiske/unmarked,
http://github.com/rbchan/unmarked
NeedsCompilation: yes
Packaged: 2015-08-28 13:36:51 UTC; aroyle
Repository: CRAN
Date/Publication: 2015-09-03 10:19:18

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'unmarked' ...
** package 'unmarked' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c detfuns.cpp -o detfuns.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c distr.cpp -o distr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c hmm.c -o hmm.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_distsamp.cpp -o nll_distsamp.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_gpcount.cpp -o nll_gpcount.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_occu.cpp -o nll_occu.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_occuPEN.cpp -o nll_occuPEN.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_pcount.cpp -o nll_pcount.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nll_pcountOpen.cpp -o nll_pcountOpen.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o unmarked.so detfuns.o distr.o hmm.o nll_distsamp.o nll_gpcount.o nll_occu.o nll_occuPEN.o nll_pcount.o nll_pcountOpen.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/unmarked/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'unmarked'
    finding HTML links ... done
    SE-methods                              html  
    SSE                                     html  
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    backTransform-methods                   html  
    birds                                   html  
    coef-methods                            html  
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    cruz                                    html  
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    formatDistData                          html  
    formatMult                              html  
    formatWideLong                          html  
    frogs                                   html  
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    imputeMissing                           html  
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    ovendata                                html  
    parboot                                 html  
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    pointtran                               html  
    predict-methods                         html  
    ranef-methods                           html  
    sight2perpdist                          html  
    simulate-methods                        html  
    unmarked-package                        html  
    unmarkedEstimate-class                  html  
    unmarkedEstimateList-class              html  
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    unmarkedFrame                           html  
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    unmarkedFrameOccuFP                     html  
    unmarkedFramePCO                        html  
    unmarkedFramePCount                     html  
    unmarkedMultFrame                       html  
    unmarkedRanef-class                     html  
    vcov-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (unmarked)
Making 'packages.html' ... done