vqtl

Package: vqtl
Type: Package
Title: Genome Scans to Accommodate and Target Genetic and Non-Genetic
Effects on Trait Variance
Version: 1.0
Date: 2016-03-04
Author: Robert Corty
Maintainer: Robert Corty <rcorty@gmail.com>
Description: In recognition that there are many factors (genetic loci, macro-genetic factors such as sex,
and environmental factors) that influence the environmental variation, the 'vqtl' package conducts genome
scans that accommodate and target these factors. The main functions of this package, scanonevar() and
scanonevar.perm() take as input a cross object from the popular 'qtl' package.
Depends: R (>= 2.14.0), dglm, evd, dplyr, qtl
Imports: RColorBrewer, gtools, stringr, plyr, scales, graphics,
grDevices
License: GPL-3
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-03-06 18:47:06 UTC; rcorty
Repository: CRAN
Date/Publication: 2016-03-07 01:01:40

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'vqtl' ...
** package 'vqtl' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'vqtl'
    finding HTML links ... done
    get.additive.coef.from.2.genoprobs      html  
    get.additive.coef.from.3.genoprobs      html  
    get.dom.coef.from.3.genoprobs           html  
    get.genoprobs.by.marker.name            html  
    get.genotypes.by.marker.name            html  
    get.peaks.from.scanonevar               html  
    is.scanonevar                           html  
    margin.plot                             html  
    plot.scanonevar                         html  
    predictive.plot                         html  
    scan.via.dglm                           html  
    scanonevar                              html  
    scanonevar.perm                         html  
    scanonevar.to.p.values                  html  
    summary.scanonevar                      html  
    units                                   html  
    validate.convert.scanonevar.to.p.values
                                            html  
    validate.input.scanonevar               html  
** building package indices
** testing if installed package can be loaded
* DONE (vqtl)
Making 'packages.html' ... done