yaImpute

Package: yaImpute
Version: 1.0-26
Date: 2015-07-20
Title: Nearest Neighbor Observation Imputation and Evaluation Tools
Author: Nicholas L. Crookston, Andrew O. Finley, John Coulston (Sunil Arya and David Mount for ANN)
Copyright: ANN library is copyright University of Maryland and Sunil
Arya and David Mount. See file COPYRIGHTS for details.
Maintainer: Nicholas L. Crookston <ncrookston.fs@gmail.com>
Depends: R (>= 2.11.0)
Imports: grDevices, graphics, stats, utils
Suggests: vegan, ccaPP, randomForest, gam, fastICA, parallel
NeedsCompilation: yes
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: yaimpute
Repository/R-Forge/Revision: 89
Repository/R-Forge/DateTimeStamp: 2015-07-20 15:12:57
Date/Publication: 2015-07-20 18:36:55
Packaged: 2015-07-20 15:25:14 UTC; rforge

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'yaImpute' ...
** package 'yaImpute' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ANN.cpp -o ANN.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c annImpute.cpp -o annImpute.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bd_pr_search.cpp -o bd_pr_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bd_search.cpp -o bd_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bd_tree.cpp -o bd_tree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c brute.cpp -o brute.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_dump.cpp -o kd_dump.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_pr_search.cpp -o kd_pr_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_search.cpp -o kd_search.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_split.cpp -o kd_split.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_tree.cpp -o kd_tree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c kd_util.cpp -o kd_util.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c perf.cpp -o perf.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rfoneprox.cpp -o rfoneprox.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c util.cpp -o util.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o yaImpute.so ANN.o annImpute.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o perf.o rfoneprox.o util.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/yaImpute/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'yaImpute'
    finding HTML links ... done
    MoscowMtStJoe                           html  
    TallyLake                               html  
    ann                                     html  
    applyMask                               html  
    asciigridimpute                         html  
    bestVars                                html  
    buildConsensus                          html  
    compare.yai                             html  
    cor.yai                                 html  
    correctbias                             html  
    ensembleImpute                          html  
    errorStats                              html  
    foruse                                  html  
    grmsd                                   html  
    impute.yai                              html  
    mostused                                html  
    newtargets                              html  
    notablydifferent                        html  
    notablydistant                          html  
    plot.compare.yai                        html  
    plot.notablydifferent                   html  
    plot.varSel                             html  
    plot.yai                                html  
    predict.yai                             html  
    print                                   html  
    rmsd.yai                                html  
    unionDataJoin                           html  
    varSelection                            html  
    vars                                    html  
    whatsMax                                html  
    yai                                     html  
Rd warning: /tmp/RtmpNDycPG/R.INSTALL1c26517e45ca/yaImpute/man/yai.Rd:65: missing file link 'rda'
Rd warning: /tmp/RtmpNDycPG/R.INSTALL1c26517e45ca/yaImpute/man/yai.Rd:71: missing file link 'runif'
    yaiRFsummary                            html  
    yaiVarImp                               html  
** building package indices
** testing if installed package can be loaded
* DONE (yaImpute)
Making 'packages.html' ... done