yakmoR

Package: yakmoR
Type: Package
Title: A Simple Wrapper for the k-Means Library Yakmo
Version: 0.1.1
Date: 2015-08-03
Author: Aydin Demircioglu
Maintainer: Aydin Demircioglu <aydin.demircioglu@ini.rub.de>
Description: This is a simple wrapper for the yakmo K-Means library (developed by Naoki Yoshinaga, see http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/). It performs fast and robust (orthogonal) K-Means.
Copyright: Original GPL-2 C++ code by Naoki Yoshinaga (see
http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/)
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.6), checkmate (>= 1.5.1), BBmisc (>= 1.9)
LinkingTo: Rcpp
Suggests: knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2015-08-04 01:06:24 UTC; drunkeneye
Repository: CRAN
Date/Publication: 2015-08-04 06:47:04

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'yakmoR' ...
** package 'yakmoR' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c yakmo_wrapper.cpp -o yakmo_wrapper.o
In file included from yakmo_wrapper.cpp:31:0:
yakmo.h: In member function 'void yakmo::kmeans::centroid_t::print(FILE*, yakmo::uint) const':
yakmo.h:596:50: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                         std::fprintf (fp, "%d", j);
                                                  ^
yakmo.h:599:86: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                             std::fprintf (fp, " %d:%.16g", _body[i].idx, _body[i].val);
                                                                                      ^
yakmo.h: In member function 'void yakmo::orthogonal_kmeans::save(const char*)':
yakmo.h:1042:53: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                 std::fprintf (fp, "%d # m\n", _opt.m);
                                                     ^
yakmo.h:1043:53: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                 std::fprintf (fp, "%d # k\n", _opt.k);
                                                     ^
yakmo.h:1044:83: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                 std::fprintf (fp, "%d # number of features\n", _kms.back ()->nf ());
                                                                                   ^
yakmo.h:1053:56: warning: format '%d' expects argument of type 'int', but argument 3 has type 'yakmo::uint {aka long unsigned int}' [-Wformat=]
                             std::fprintf (fp, "c%d_", i);
                                                        ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o yakmoR.so RcppExports.o yakmo_wrapper.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/yakmoR/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'yakmoR'
    finding HTML links ... done
    orthoKMeansPredict                      html  
    orthoKMeansPredictCpp                   html  
    orthoKMeansTrain                        html  
    orthoKMeansTrainCpp                     html  
    yakmoR                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (yakmoR)
Making 'packages.html' ... done