yaqcaffy

Package: yaqcaffy
Title: Affymetrix expression data quality control and reproducibility
analysis
Version: 1.32.0
Author: Laurent Gatto
Description: Quality control of Affymetrix GeneChip expression data
and reproducibility analysis of human whole genome chips
with the MAQC reference datasets.
Maintainer: Laurent Gatto <lg390@cam.ac.uk>
Depends: simpleaffy (>= 2.19.3), methods
Imports: stats4
Suggests: MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
biocViews: Microarray,OneChannel,QualityControl,ReportWriting
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 03:04:17 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'yaqcaffy' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'yaqcaffy'
Creating a generic function for 'merge' from package 'base' in package 'yaqcaffy'
Creating a generic function for 'identical' from package 'base' in package 'yaqcaffy'
** help
*** installing help indices
  converting help for package 'yaqcaffy'
    finding HTML links ... done
    YAQCStats-class                         html  
    finding level-2 HTML links ... done

    YaqcControlProbes-class                 html  
    getAllInt                               html  
    getBioProbes                            html  
    getOutliers                             html  
    getQCRatios                             html  
    getRatioProbes                          html  
    getSpikeProbes                          html  
    probeSelectionInterface                 html  
    reprodPlot                              html  
    yaqc.affy                               html  
    yaqc.plot                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (yaqcaffy)
Making 'packages.html' ... done