Package: FacPad
Type: Package
Title: Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment
Version: 3.0
Date: 2014-03-25
Author: Haisu Ma
Maintainer: Haisu Ma <haisu.ma.pku.2008@gmail.com>
Depends: R (>= 2.12.1), Rlab, MASS
Description: This method tries to explain the gene-wise treatment response ratios in terms of the latent pathways. It uses bayesian sparse factor modeling to infer the loadings (weights) of each pathway on its associated probesets as well as the latent factor activity levels for each treatment.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-03-27 22:56:46 UTC; Evelyn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-28 00:31:36
Package: iFad
Type: Package
Title: An integrative factor analysis model for drug-pathway
association inference
Version: 3.0
Date: 2014-03-25
Author: Haisu Ma <haisu.ma.pku.2008@gmail.com>
Maintainer: Haisu Ma <haisu.ma.pku.2008@gmail.com>
Depends: R (>= 2.12.1), Rlab, MASS, coda, ROCR
Description: This package implements a Bayesian sparse factor model for the joint analysis of paired datasets, one is the gene expression dataset and the other is the drug sensitivity profiles, measured across the same panel of samples, e.g., cell lines. Prior knowledge about gene-pathway associations can be easily incorporated in the model to aid the inference of drug-pathway associations.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-03-27 22:56:40 UTC; Evelyn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-27 23:58:34
Package: TRD
Type: Package
Title: Transmission Ratio Distortion
Version: 1.1
Date: 2015-11-10
Author: Lam Opal Huang
Maintainer: Lam Opal Huang <opal.huang@mail.mcgill.ca>
Depends: Rlab (>= 2.15.1)
Description: Transmission Ratio Distortion (TRD) is a genetic phenomenon where the two alleles from either parent are not transmitted to the offspring at the expected 1:1 ratio under Mendelian inheritance, leading to spurious signals in genetic association studies. Functions in this package are developed to account for this phenomenon using loglinear model and Transmission Disequilibrium Test (TDT). Some population information can also be calculated.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-11-10 23:24:37 UTC; Opalh
Repository: CRAN
Date/Publication: 2015-11-11 00:41:56
providing 
.