Package: CNORdt
Type: Package
Title: Add-on to CellNOptR: Discretized time treatments
Version: 1.14.0
Date: 2012-09-18
Author: A. MacNamara
Maintainer: A. MacNamara <aidan.macnamara@ebi.ac.uk>
Description: This add-on to the package CellNOptR handles time-course
data, as opposed to steady state data in CellNOptR. It scales
the simulation step to allow comparison and model fitting for
time-course data. Future versions will optimize delays and
strengths for each edge.
License: GPL-2
Depends: R (>= 1.8.0), CellNOptR (>= 0.99), abind
LazyLoad: yes
biocViews: CellBasedAssays, CellBiology, Proteomics, TimeCourse
NeedsCompilation: yes
Packaged: 2016-05-04 04:44:41 UTC; biocbuild
Package: CNORfeeder
Type: Package
Title: Integration of CellNOptR to add missing links
Version: 1.12.0
Date: 2015-14-08
Author: F.Eduati
Maintainer: F.Eduati <eduati@ebi.ac.uk>
Depends: R (>= 2.15.0), CellNOptR (>= 1.4.0), graph
Suggests: minet, catnet, Rgraphviz, RUnit, BiocGenerics, igraph
biocViews: CellBasedAssays, CellBiology, Proteomics, Bioinformatics,
NetworkInference
Description: This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:53:51 UTC; biocbuild
Package: CNORfuzzy
Type: Package
Title: Addon to CellNOptR: Fuzzy Logic
Version: 1.14.0
Date: 2013-8-28
Author: M. Morris, T. Cokelaer
Maintainer: T. Cokelaer <cokelaer@ebi.ac.uk>
Description: This package is an extension to CellNOptR. It contains
additional functionality needed to simulate and train a prior
knowledge network to experimental data using constrained fuzzy
logic (cFL, rather than Boolean logic as is the case in
CellNOptR). Additionally, this package will contain functions
to use for the compilation of multiple optimization results
(either Boolean or cFL).
License: GPL-2
Depends: R (>= 2.15.0), CellNOptR (>= 1.4.0), nloptr (>= 0.8.5)
Suggests: xtable, Rgraphviz, RUnit, BiocGenerics
LazyLoad: yes
biocViews: Network
NeedsCompilation: yes
Packaged: 2016-05-04 04:41:49 UTC; biocbuild
providing 
.