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Last data update: 2014.03.03

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Results 1 - 9 of 9 found.
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RTCGA.CNV : CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project

Package: RTCGA.CNV
Type: Package
Title: CNV (Copy-number variation) datasets from The Cancer Genome
Atlas Project
Version: 1.0.2
Date: 2015-12-14
Author: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas
Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is
explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving
+Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:54:47 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.PANCAN12 : PanCan 12 from Genome Cancer Browser

Package: RTCGA.PANCAN12
Type: Package
Title: PanCan 12 from Genome Cancer Browser
Version: 1.0.2
Date: 2015-11-10
Author: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides clinical, expression, cnv and mutation data from Genome Cancer
Browser.
License: GPL-2
LazyData: FALSE
Roxygen: list(wrap = TRUE)
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:54:26 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.RPPA : RPPA datasets from The Cancer Genome Atlas Project

Package: RTCGA.RPPA
Type: Package
Title: RPPA datasets from The Cancer Genome Atlas Project
Version: 1.0.2
Date: 2015-12-02
Author: Witold Chodor <witoldchodor@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides RPPA datasets from The Cancer Genome Atlas Project for all
available cohorts types from http://gdac.broadinstitute.org/. Data format is
explained here https://wiki.nci.nih.gov/display/TCGA/Protein+Array
+Data+Format+Specification?src=search
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:54:26 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.clinical : Clinical datasets from The Cancer Genome Atlas Project

Package: RTCGA.clinical
Type: Package
Title: Clinical datasets from The Cancer Genome Atlas Project
Version: 20151101.2.2
Date: 2016-04-26
Author: Marcin Kosinski <m.p.kosinski@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides clinical datasets from The Cancer Genome
Atlas Project for all cohorts types from
http://gdac.broadinstitute.org/. Clinical data format is
explained here
https://wiki.nci.nih.gov/display/TCGA/Clinical+Data+Overview. Data from 2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.2.0), RTCGA
Suggests: knitr
biocViews: Annotation Data
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-28 15:42:47 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation Data
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.mRNA : mRNA datasets from The Cancer Genome Atlas Project

Package: RTCGA.mRNA
Type: Package
Title: mRNA datasets from The Cancer Genome Atlas Project
Version: 1.0.2
Date: 2015-12-02
Author: Witold Chodor <witoldchodor@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides mRNA datasets from The Cancer Genome Atlas Project for all
available cohorts types from http://gdac.broadinstitute.org/. Data format is
explained here https://wiki.nci.nih.gov/display/TCGA/Gene+expression+data Data from
2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:54:08 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.methylation : Methylation datasets from The Cancer Genome Atlas Project

Package: RTCGA.methylation
Type: Package
Title: Methylation datasets from The Cancer Genome Atlas Project
Version: 1.0.2
Date: 2015-12-23
Authors@R: c( person("Marcin", "Kosinski", role = c("aut", "cre"), email =
"m.p.kosinski@gmail.com"), person("Witold", "Chodor", role = c("aut"), email =
"witoldchodor@gmail.com") )
Description: Package provides methylation (humanmethylation27) datasets from The Cancer
Genome Atlas Project for all available cohorts types from
http://gdac.broadinstitute.org/. Data format is explained here
https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015-11-01
snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Author: Marcin Kosinski [aut, cre], Witold Chodor [aut]
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Packaged: 2016-05-28 15:53:27 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.miRNASeq : miRNASeq datasets from The Cancer Genome Atlas Project

Package: RTCGA.miRNASeq
Type: Package
Title: miRNASeq datasets from The Cancer Genome Atlas Project
Version: 1.0.2
Date: 2015-12-03
Author: Witold Chodor <witoldchodor@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all
available cohorts types from http://gdac.broadinstitute.org/. Data format is
explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview
Data from 2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.3.0), RTCGA
Suggests: knitr
biocViews: AnnotationData
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:53:14 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: AnnotationData
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.mutations : Mutations datasets from The Cancer Genome Atlas Project

Package: RTCGA.mutations
Type: Package
Title: Mutations datasets from The Cancer Genome Atlas Project
Version: 20151101.2.2
Date: 2016-04-26
Author: Marcin Kosinski <m.p.kosinski@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides mutations datasets from The Cancer Genome
Atlas Project for all cohorts types from
http://gdac.broadinstitute.org/. Mutations data format is
explained here
https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification.
There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.2.0), RTCGA
Suggests: knitr
biocViews: Annotation Data
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-28 15:46:04 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation Data
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0

RTCGA.rnaseq : Rna-seq datasets from The Cancer Genome Atlas Project

Package: RTCGA.rnaseq
Title: Rna-seq datasets from The Cancer Genome Atlas Project
Version: 20151101.2.2
Date: 2016-04-26
Author: Marcin Kosinski <m.p.kosinski@gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski@gmail.com>
Description: Package provides rna-seq datasets from The Cancer Genome
Atlas Project for all cohorts types from
http://gdac.broadinstitute.org/. Rna-seq data format is
explained here
https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2.
Data source is illumina hiseq Level 3 RSEM normalized expression data.
Data from 2015-11-01 snapshot.
License: GPL-2
LazyData: TRUE
Repository: Bioconductor
BugReports: https://github.com/RTCGA/RTCGA/issues
Depends: R (>= 3.2.0), RTCGA
Suggests: knitr
biocViews: Annotation Data
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-05-28 15:46:27 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Annotation Data
● 0 images, 0 functions, 1 datasets
● Reverse Depends: 0